Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0359 ATGGATTGTCTTAGTTGGGATGATGACTCACAACTTGTTGGCAGCATACCAATCTTGTGGAACACTCAACCACAAGACTTTGCAAGAGACTATTCAATGTCCAACCCAAGTTCAAGTGTTTTTAATTATCAAATGCAAGAGATGCAGAAGGTTCAATTAGGAGCTGGAAACAGTTTGGAAGAAACTTTAATATTCCAATCATACCCTTCACTTCCAGTCAATATCAATCCACCTAACAATTGTGTTCCAGATTTCAACATGGCCCACCAACAAATCAGCAAGAGTACTACTACATGCTCTCTTGAATCATCACTTGATTGTTTCCTTTCAGCCACTACTAATAGTAACAACACTGACACTAATTCTGTTCAAGATGATGGAATTTCCTTGATTTTTTCTGACTGCAAGAACAGAAACTTATGGAACTTTAGTGCAGTTTCTTCTGGTGAATCTGAGAGTACTAATGTTTCCAATGCTAGAAACAAAGACATGCAGCATCCATTCAAGGAACTAGATGAAATAGTATCTCAAAGTTCCTCAGATCAAGGTAAAATGATTGATAATTCCAAGGTTCTTTCCACAAAAAGGACTAATAATGATCAATATGATCCTTACTTCAATATTACTACTCAAAATTCTTCTGCTACTGAATTTGGTTTCAAGCTTATCTCAGAAAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCCTGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCAGTGTCATTGTCAAATTCATGCATTGAAGAGCCTGATCCTGAGGCTATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCAGTGATGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTAGCTGCAAGGCAAAGAAGGGAAAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATCGTTCCTGGTGGAACCAAGATGGATACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGAGCACAAGTCAAAGCACTAGAGAATCTAGGAAACAAGATTGATACAATGAATAATTGTCCTCCTACAAGCATAGCTTTCTCCTTCAACCCTATCGAAAACCCTAACGACAACATCCAATATTCCCATGGTTGA 1191 0.3745 MDCLSWDDDSQLVGSIPILWNTQPQDFARDYSMSNPSSSVFNYQMQEMQKVQLGAGNSLEETLIFQSYPSLPVNINPPNNCVPDFNMAHQQISKSTTTCSLESSLDCFLSATTNSNNTDTNSVQDDGISLIFSDCKNRNLWNFSAVSSGESESTNVSNARNKDMQHPFKELDEIVSQSSSDQGKMIDNSKVLSTKRTNNDQYDPYFNITTQNSSATEFGFKLISEKPPKSKKPRWDNKCPGSSNINFQQPNSSVSLSNSCIEEPDPEAIAQMKEMIYRAAAFRPVMNLGLEVMEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRAQVKALENLGNKIDTMNNCPPTSIAFSFNPIENPNDNIQYSHG* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0359 396 Pfam Helix-loop-helix DNA-binding domain 313 352 IPR011598 GO:0046983
Mal4g0359 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 364 IPR036638 GO:0046983
Mal4g0359 396 SMART finulus 309 358 IPR011598 GO:0046983
Mal4g0359 396 Gene3D - 308 371 IPR036638 GO:0046983
Mal4g0359 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Mal4g0359 396 PANTHER TRANSCRIPTION FACTOR BHLH87 1 386 - -
Mal4g0359 396 Coils Coil 342 362 - -
Mal4g0359 396 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 386 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0359 Mal-Chr4 2682893 2684083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0359 103 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 56.655 4.04e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal4g0359 HLH 5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0359 - - gmx:100778004 433.721