Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0336 ATGAATGAGATGTCAAGAAATGAGAGAGAATCTTCAGAAGAGAGGAAGCTTGAACTAAGGCTTGGTCCACCTGGTGTTGAACACTGGTTTCACACCAACAACAAATTACAAAGAGATGAATCTCTTCTCTCTCTTGGTAACTACTTTTCCTCAAACAATGGTTTTCAACAACATGTGAGAGGTAACAAAGAATCTTCATCATCACAAACCTGTTGTCCTAAGACAGTAGTAGAGTTACAGAATGGTGATAACAAAGTTACAGCTGTTTCCAACACTTCTCAGAAAAGAACTGCTCCTGGACCAGTAGTGGGTTGGCCACCAATTCGTTCATTCAGGAAGAATCTTGCAACTAGCAGCAGCACTTCTAAGCCATCACCACCTGAGTCACATAATCAGCAGCACAACATTAACAAGGTTTCTGGTAAAAAACCTATTCACAACAACTATGGTAAAGGTTTGTTTGTTAAGATCAATATGGATGGTGTTCCAATTGGTAGAAAAGTTGATCTCAATGCTTATGATAGCTATGAAAATCTTTCTTCAGCTGTGGATGAGCTCTTTAGAGGACTCCTTAAAGCTCAAAGAGATTCCTCTTCTTGTGGAGGTAACAAGATGGAAGAGGAAGAGAAAGTGATTACTGGATTATTGGATGGAAGTGGGGAATATACTCTTGTGTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTTCGAGTGTTGAAGAGTACAGAGCTTTCTGCTTTTACACTTGGTACTAAGCAAGACAAGATTTGA 816 0.3995 MNEMSRNERESSEERKLELRLGPPGVEHWFHTNNKLQRDESLLSLGNYFSSNNGFQQHVRGNKESSSSQTCCPKTVVELQNGDNKVTAVSNTSQKRTAPGPVVGWPPIRSFRKNLATSSSTSKPSPPESHNQQHNINKVSGKKPIHNNYGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLKAQRDSSSCGGNKMEEEEKVITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGTKQDKI* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0336 271 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 269 IPR003311 GO:0005634|GO:0006355
Mal4g0336 271 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 269 - -
Mal4g0336 271 ProSiteProfiles PB1 domain profile. 152 256 IPR000270 GO:0005515
Mal4g0336 271 MobiDBLite consensus disorder prediction 87 144 - -
Mal4g0336 271 SUPERFAMILY CAD & PB1 domains 144 253 - -
Mal4g0336 271 Gene3D - 147 268 - -
Mal4g0336 271 MobiDBLite consensus disorder prediction 112 142 - -
Mal4g0336 271 Pfam AUX/IAA family 17 260 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0336 Mal-Chr4 2446483 2449985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0336 156 267 B3 DNA Binding Superfamily AT4G23980 33.929 3.33e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Mal4g0336 AUX_IAA 2.1e-70 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0336 K14484 - gmx:100804593 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0465 5 6857920 6860878 Mal4g0336 4 2446483 2449985 ECH
Mal4g0336 4 2446483 2449985 Mal4g0336 4 2446483 2449985 ECH
Mal4g0336 4 2446483 2449985 Mal5g0465 5 6857920 6860878 PCT