Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal4g0289 | ATGGCTAAAGATCGTAAGCATGATGATTATGAGAAAACCTTGAAAAGGTCTTCTTGTTCACTAAGTGATGAAGATGATGCTAAGCATGAGGTTTCTGTTGTTCAAGAATCTACACACAAGTGCAATGAATGTGGAAAAACTTTTAGCAACGGAAAAGCATTGGGTGGTCACCGAAGATCTCACTTTCCTAAGAAGAAACATCATCAAGTAAAGGTGGAAACCCTTTTCTCAATACAAGGTAATAATAATAGCTCTAGTTTTGTTAAAGATCGTAACCATGATTATGAGAAAACCTATGTAAAGTCAGAAAAGACTGTGAAAAGGTCTTATAGTTCGCTATCAAGTGATGAAGATGATGCTAAGGATGAGGTTATTGTTCTAGAATCTACACACAAATGCGATGTTTGTGGAAAAACTTTTAGCAACGGAAAAGCGTTGGGTGGTCATCGGAGATCTCACAATCTTAAGAAGAAACCTAATCATCATTCAGAATTAAAGGTGGAAACCCCTTTCTCAATACATGGTAGTGGTAATAATAGGGCTAGTTTTGATAAAGATCATAAGCATGATTATGAGAACACCTATGAAGAGTCGAAAAAGAGGATAAAAAGGTCTTCTAGTTCACTATCAAGTGATGAAGATGATGCTAAGGATGAAGTTTCTATTCTAGAATCTACACACAAGTGCAATGAATGTGGAAAAACTTTTAGCAACGGAAAAGCATTGGGCGGTCACCGGAGATCTCACTTTCATATAAAGAAAACTAATCAGCCTTCACAAAAGGTGAAAACCCTAATAGAAGAAATTGATGATTCTGGGGATGAAGAAGAAATTGATGGCATAAAGAAACCAACTTGTTATCTTTGCAAAAAGGAGTTTCCAACCAAGAATGCTTTGTATGGTCACATGAGGTCTCACCCTAATAGGGTTTGTAAAGGACTTAGTCCTCCCTCAATTAAAGAAGAACAAGATGATGGCAATTTTTCTTTGCCAAAATGGCAAAAGAGAGATAAAAGAGGTCGAAAGTGTATTGGTAGTGCTGCAGCGGCTTTAATTCTTTTGCACCTTCGTTCTGATAAGTCCTTTTGTGTTGGTGAATCATCATCAAATGGGAATGGTAGGAATGAGCTTGGTGGTGATAGTGACAGTAGTGATCAGCAGCTAAAGAAAGGAAAAGGTTTACTTAATCTGAATGAGCCATATGTTTTGGAGGATTGA | 1218 | 0.3711 | MAKDRKHDDYEKTLKRSSCSLSDEDDAKHEVSVVQESTHKCNECGKTFSNGKALGGHRRSHFPKKKHHQVKVETLFSIQGNNNSSSFVKDRNHDYEKTYVKSEKTVKRSYSSLSSDEDDAKDEVIVLESTHKCDVCGKTFSNGKALGGHRRSHNLKKKPNHHSELKVETPFSIHGSGNNRASFDKDHKHDYENTYEESKKRIKRSSSSLSSDEDDAKDEVSILESTHKCNECGKTFSNGKALGGHRRSHFHIKKTNQPSQKVKTLIEEIDDSGDEEEIDGIKKPTCYLCKKEFPTKNALYGHMRSHPNRVCKGLSPPSIKEEQDDGNFSLPKWQKRDKRGRKCIGSAAAALILLHLRSDKSFCVGESSSNGNGRNELGGDSDSSDQQLKKGKGLLNLNEPYVLED* | 406 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal4g0289 | 405 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 198 | 318 | IPR044653 | GO:0003700 | |
| Mal4g0289 | 405 | SUPERFAMILY | beta-beta-alpha zinc fingers | 128 | 157 | IPR036236 | - | |
| Mal4g0289 | 405 | MobiDBLite | consensus disorder prediction | 365 | 405 | - | - | |
| Mal4g0289 | 405 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 131 | 158 | IPR013087 | - | |
| Mal4g0289 | 405 | SMART | c2h2final6 | 227 | 249 | IPR013087 | - | |
| Mal4g0289 | 405 | SMART | c2h2final6 | 131 | 153 | IPR013087 | - | |
| Mal4g0289 | 405 | SMART | c2h2final6 | 284 | 306 | IPR013087 | - | |
| Mal4g0289 | 405 | SMART | c2h2final6 | 39 | 61 | IPR013087 | - | |
| Mal4g0289 | 405 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 39 | 66 | IPR013087 | - | |
| Mal4g0289 | 405 | MobiDBLite | consensus disorder prediction | 144 | 217 | - | - | |
| Mal4g0289 | 405 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 284 | 306 | IPR013087 | - | |
| Mal4g0289 | 405 | MobiDBLite | consensus disorder prediction | 365 | 391 | - | - | |
| Mal4g0289 | 405 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 227 | 254 | IPR013087 | - | |
| Mal4g0289 | 405 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 133 | 153 | IPR013087 | - | |
| Mal4g0289 | 405 | SUPERFAMILY | beta-beta-alpha zinc fingers | 35 | 67 | IPR036236 | - | |
| Mal4g0289 | 405 | PANTHER | ZINC FINGER PROTEIN ZAT4-LIKE | 198 | 318 | - | - | |
| Mal4g0289 | 405 | PANTHER | ZINC FINGER PROTEIN ZAT4-LIKE | 96 | 182 | - | - | |
| Mal4g0289 | 405 | PANTHER | ZINC FINGER PROTEIN ZAT4-LIKE | 23 | 97 | - | - | |
| Mal4g0289 | 405 | SUPERFAMILY | beta-beta-alpha zinc fingers | 226 | 306 | IPR036236 | - | |
| Mal4g0289 | 405 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 96 | 182 | IPR044653 | GO:0003700 | |
| Mal4g0289 | 405 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 23 | 97 | IPR044653 | GO:0003700 | |
| Mal4g0289 | 405 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 41 | 61 | IPR013087 | - | |
| Mal4g0289 | 405 | MobiDBLite | consensus disorder prediction | 180 | 217 | - | - | |
| Mal4g0289 | 405 | Pfam | C2H2-type zinc finger | 39 | 61 | - | - | |
| Mal4g0289 | 405 | Pfam | C2H2-type zinc finger | 131 | 153 | - | - | |
| Mal4g0289 | 405 | Pfam | C2H2-type zinc finger | 286 | 307 | - | - | |
| Mal4g0289 | 405 | Pfam | C2H2-type zinc finger | 227 | 249 | - | - | |
| Mal4g0289 | 405 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 229 | 251 | IPR013087 | - | |
| Mal4g0289 | 405 | Gene3D | Classic Zinc Finger | 224 | 306 | - | - | |
| Mal4g0289 | 405 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Mal4g0289 | 405 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 286 | 306 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal4g0289 | Mal-Chr4 | 1688811 | 1690028 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal4g0289 | 226 | 322 | C2H2 Transcription Factor Family | AT2G28200 | 29.915 | 6.54e-06 | 45.8 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Mal4g0289 | zf-C2H2_6 | 0.00017 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal4g0289 | K09228 | - | cam:101497250 | 206.453 |