Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0288 ATGTTTTATGATTTTTTCAACCTTGAATTCTCAAAGAATTTTGTGGAGGGTTCATCCTCATCTTCATTACGATGGGCTAATAATAAGCCCAAAAATGAAGAGATCGTCAAGGAGGAGTTTCCAAACTCGAGAATTCACGCATGTAAGTATTGTAGCAGGCAATTTGCTTCTAAACATGCTTTATATGGGCATCAAAATGCTCATCGCAAAGAGCGCATGCAGATCAAGCAAGAAAAAATGCCAGACTCGAGAATTCACTTATGTAAATACTGCGGGAGACAATTTACTTCCGGAAATGCTTTGGGTGGGCACCAAAATGCTCACCGCAAAGAGCGTCACCAAGAAAAGATACGTCTTGATTTAATCAAGGAAGAAAAGTTGTCGAACTCGATAACTTTTGTATGGGAGAATATTTTTCCTTCTGCTCAAGCTCAAGTTATAAAACAATATTATAACACTCATGAACATGCACTTGCAAAGATTCAGAGTGATACTGGAACCTCCGATGATCCTATTGATCTTACACTTAGGCTTTAA 537 0.3818 MFYDFFNLEFSKNFVEGSSSSSLRWANNKPKNEEIVKEEFPNSRIHACKYCSRQFASKHALYGHQNAHRKERMQIKQEKMPDSRIHLCKYCGRQFTSGNALGGHQNAHRKERHQEKIRLDLIKEEKLSNSITFVWENIFPSAQAQVIKQYYNTHEHALAKIQSDTGTSDDPIDLTLRL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0288 178 PANTHER OS02G0182300 PROTEIN 78 137 - -
Mal4g0288 178 Pfam C2H2-type zinc finger 46 71 - -
Mal4g0288 178 Pfam C2H2-type zinc finger 86 111 - -
Mal4g0288 178 PANTHER ZINC FINGER PROTEIN JAGGED 78 137 IPR045320 GO:0003700
Mal4g0288 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Mal4g0288 178 SUPERFAMILY beta-beta-alpha zinc fingers 44 108 IPR036236 -
Mal4g0288 178 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Mal4g0288 178 Gene3D Classic Zinc Finger 45 108 - -
Mal4g0288 178 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Mal4g0288 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Mal4g0288 178 PANTHER ZINC FINGER PROTEIN JAGGED 20 77 IPR045320 GO:0003700
Mal4g0288 178 PANTHER OS02G0182300 PROTEIN 20 77 - -
Mal4g0288 178 SMART c2h2final6 86 108 IPR013087 -
Mal4g0288 178 SMART c2h2final6 46 68 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0288 48 133 C2H2 Transcription Factor Family AT3G53600 32.222 1.34e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g0288 zf-C2H2_6 1.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0288 - - aof:109832150 73.559