Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g5143 ATGGCAAAATCTATACCAAAAATTGGTTCGCGTAAAAATGGACGTATTGGTTCGCGTAAAAATGGACGTATTGGTTCGCGTAAGCATCCTCGTAAAATACCAACGGGTGTTATTTTTGTTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGAGGTCAGGTGATTTCTTGGTCCTCTGCCGGTTCGTGTGGATTCAAGGGTACACGAAGGGGGACACCATTTGCCGCTCAAACCGCAGCTCGAAATGCTATTCGAGCAGTAGTCGATCAAGGCATGCAACGAGCAGGAGTCATAATAAAAGGTCCCGGTCTAGGAAGAGATGCGGCATTAAGAGCTATTGGTAGAAGTGGTCAAGCAGATACAATAGGCATTGCAATGCGAAGAATTTTGCTCGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAGTAGGTATTCAAGAATCAATACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTAGGGACGCGTCTATTTGTTTCAAAGGTCCTGGATATGTAACTGCTCAAGACATCATTTTACCACCTTCGGTGGAAATCATTGATAATACACAACATATAGCTAACCTAACAGAACCCATTAATTTTTCTATTGAATTACAAATTGAGAGAAAGCGGGGATATCGTATAAAAACACTAAACAACATTCAAGATGGAAGTTATACTATAGATGCTGTATTCATGCCTAAGAAGAAAACTTAA 792 0.3889 MAKSIPKIGSRKNGRIGSRKNGRIGSRKHPRKIPTGVIFVQASFNNTIVTVTDVRGQVISWSSAGSCGFKGTRRGTPFAAQTAARNAIRAVVDQGMQRAGVIIKGPGLGRDAALRAIGRSGQADTIGIAMRRILLGEIEGTCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIIDNTQHIANLTEPINFSIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPKKKT* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g5143 263 SUPERFAMILY Translational machinery components 32 121 - -
Mal3g5143 263 MobiDBLite consensus disorder prediction 1 30 - -
Mal3g5143 263 PANTHER - 33 260 - -
Mal3g5143 263 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 140 258 IPR036643 -
Mal3g5143 263 SMART rpoldneu2 111 263 IPR011263 GO:0003899|GO:0006351
Mal3g5143 263 CDD RNAP_alpha_NTD 121 262 - -
Mal3g5143 263 Pfam Ribosomal protein S11 36 122 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mal3g5143 263 Hamap 30S ribosomal protein S11 [rpsK]. 7 150 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mal3g5143 263 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA 33 260 IPR011773 GO:0003677|GO:0003899|GO:0006351
Mal3g5143 263 Gene3D Ribosomal protein S11 18 144 IPR036967 GO:0003735|GO:0005840|GO:0006412
Mal3g5143 263 MobiDBLite consensus disorder prediction 13 30 - -
Mal3g5143 263 Pfam RNA polymerase Rpb3/RpoA insert domain 147 239 IPR011262 GO:0003899|GO:0006351|GO:0046983
Mal3g5143 263 Gene3D - 145 257 IPR036643 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g5143 Mal-Chr3 131554350 131555581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g5143 36 121 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 34.737 4.46e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g5143 K03040 - han:110898696 362.459