Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g5088 ATGGTAGTGGTGAGTGAGAGAGCAATGCATTCGGTTATGGCGGATACAACGGAATTGAAGGAGCGGTTATGGAAACTTGTTAAGACTATCGTTGACTCCGGTGATGACTATACTCTGCAAACCGCCGACGAAGCAATCGCTACTCTTTCTTCTCTCAAGAACTTTAAGAAGTCTCGAACAAGAACAACAACAAAAAACTCTTTCTCTGATAAATTGGACCAATTTACCCCTCCTCCTCAATTTCGTTGCCCTATTTCTACTCAATTGATGATCGACCCTGTTATCTTGTCCACGGGACAGACTTATGATCGGCCATTCATCCAAAGATGGTTGAATGAAGGCAAAAGAACATGCCCTCAAACCCAGCAAGTTCTCTCTCACACAATTCTTACACCTAATTACTTGGTTCGAGACATGATTGCACAGTGGTGTAAGGAGCGTGGACTTGAGCTACCACAGCCTTCTACTCGGGACACGGATCAAGTAGTGACTAATGCAGACAGAGACCGTTTAAATGTATTGCTTCATAAGTTATCGTTGTCTGTTTCTGATCAGAAAGCGGCTGCGAAAGAGCTTCGCTTGTTAACAAAGCGAACACCTTCATTTCGAACCCTTTTTAAGGAGTCCGGTGATGTGATCACGCAGTTGCTTCAACCCTTATCACCAGGCACTGCTTGTCCTCACCCTGATCTTCAAGAGGATTTGATCACAACTATTCTGAATCTCTCAATTCTTGATGATAATAAGAAAGTGTTTGCAGAGGATCCAACCCTCATTAACCTGTTGATTGATGCCATGAAATGGGGAACCATTCCAACAAAAAGCAATGCTGCAGCAGCTATTTTCACATTATCAGCAATCGATTCCAACAAGCTCATCATTGGAAAATCTGGAGCTATCAAACATTTGGTTGGCCTTCTAGATGAGGGAGATACATTAGCCATGAAAGATGCCGCATCAGCCATATTTAACTTATGTCTTGTTCACGAGAATAAAGGGAGGACCGTGCGAGAAGGGGCAGTTAAGGTCATTTTGAATAAGATCATGAACAACATTCTAGTTGATGAGTTGTTGGCTATACTGGCACTCCTCTCCAGTCATCCCACGGCTGTTGAAGAAATGCGTGATCGCAGCGCAGTTCCTTTCTTACTGAGAATTATAAGGGAAAGCGCATCAGAAAGATGCAAGGAAAATTGTGTTGCAATCCTATATACAATCTGTTATAATGATAGGACAATGTGGAGGGAAATCAAAGAAGAAGAAAAGACCAATAGTACATTATCTAAGCTTGCACAATGCGGAACTTCAAGGGCGAAAAGGAAGGCTAGCGGTATTCTAGAGAGGGTCAACAGATCTCCATCCTTAACTCACACTGCTTAG 1380 0.4275 MVVVSERAMHSVMADTTELKERLWKLVKTIVDSGDDYTLQTADEAIATLSSLKNFKKSRTRTTTKNSFSDKLDQFTPPPQFRCPISTQLMIDPVILSTGQTYDRPFIQRWLNEGKRTCPQTQQVLSHTILTPNYLVRDMIAQWCKERGLELPQPSTRDTDQVVTNADRDRLNVLLHKLSLSVSDQKAAAKELRLLTKRTPSFRTLFKESGDVITQLLQPLSPGTACPHPDLQEDLITTILNLSILDDNKKVFAEDPTLINLLIDAMKWGTIPTKSNAAAAIFTLSAIDSNKLIIGKSGAIKHLVGLLDEGDTLAMKDAASAIFNLCLVHENKGRTVREGAVKVILNKIMNNILVDELLAILALLSSHPTAVEEMRDRSAVPFLLRIIRESASERCKENCVAILYTICYNDRTMWREIKEEEKTNSTLSKLAQCGTSRAKRKASGILERVNRSPSLTHTA* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g5088 459 CDD RING-Ubox_PUB 81 123 IPR045210 -
Mal3g5088 459 Pfam U-box domain 78 147 IPR003613 GO:0004842|GO:0016567
Mal3g5088 459 Pfam Armadillo/beta-catenin-like repeat 290 326 IPR000225 GO:0005515
Mal3g5088 459 SUPERFAMILY RING/U-box 71 152 - -
Mal3g5088 459 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 9 457 - -
Mal3g5088 459 SUPERFAMILY ARM repeat 181 449 IPR016024 -
Mal3g5088 459 SMART Ubox_2 80 143 IPR003613 GO:0004842|GO:0016567
Mal3g5088 459 PANTHER U BOX DOMAIN-CONTAINING 9 457 - -
Mal3g5088 459 SMART arm_5 367 408 IPR000225 GO:0005515
Mal3g5088 459 SMART arm_5 287 327 IPR000225 GO:0005515
Mal3g5088 459 Gene3D - 206 351 IPR011989 -
Mal3g5088 459 Gene3D - 352 453 IPR011989 -
Mal3g5088 459 ProSiteProfiles U-box domain profile. 76 150 IPR003613 GO:0004842|GO:0016567
Mal3g5088 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 150 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g5088 Mal-Chr3 131040650 131042606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g5088 139 459 U-box Gene Family AT3G07360 56.135 3.93e-120 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g5088 - - gmx:100806619 618.616