Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g5068 ATGGATGATGACACCATAAGAATTCTGGGACTGGTTGCATCCTTTACGTTTCTTATAGTACCATGGTTTATCCCTCTGTTTTACCTCATAGTCGAGGCTTGCCGCTGGTGCCTCCCTAACACCTCCTCCTCCTCGATGAGTGATGTGGAGTCCCTTCATTCCGAAGAGTCAACAATAATGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGTCACCACACGGCTTAGATGAGTCTGTTATAAACGTTATTCCGTCTTTCATCTACAAAACCACCACTATGAAGTCTGAAGAAGAAGAAGAAGAAGAAGAATCTGATGGTGGTGACTGTGTCATTTGCTTGGGAGAATTCCAAGATAATGATCACATTCGTACTCTCCCTCTTTGCTCTCACACTTTCCATCTTAATTGCATTGACGTTTGGCTTCGTTCAAACCCTAACTGTCCTATATGTCGCTCATGTCTTTGTTGTTTTGAGGAGGACATTCTGTTCAAACACTCTGCTTCCGAGCCGGAGAGAATGGTCGTCATCGACATCCCTGCCGCCATAGTCGAGTGA 558 0.4588 MDDDTIRILGLVASFTFLIVPWFIPLFYLIVEACRWCLPNTSSSSMSDVESLHSEESTIMEEEEEEEEEEESPHGLDESVINVIPSFIYKTTTMKSEEEEEEEESDGGDCVICLGEFQDNDHIRTLPLCSHTFHLNCIDVWLRSNPNCPICRSCLCCFEEDILFKHSASEPERMVVIDIPAAIVE* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g5068 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 157 IPR013083 -
Mal3g5068 185 SUPERFAMILY RING/U-box 95 156 - -
Mal3g5068 185 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 41 156 - -
Mal3g5068 185 Pfam Ring finger domain 109 152 IPR001841 -
Mal3g5068 185 Coils Coil 52 72 - -
Mal3g5068 185 MobiDBLite consensus disorder prediction 42 76 - -
Mal3g5068 185 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Mal3g5068 185 PANTHER RING-H2 FINGER PROTEIN ATL65 41 156 - -
Mal3g5068 185 SMART ring_2 110 151 IPR001841 -
Mal3g5068 185 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g5068 Mal-Chr3 130772946 130773503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g5068 72 155 C3H Transcription Factor Family AT3G18930 48.235 6.22e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g5068 - K19041 mtr:MTR_7g116210 120.168