Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g5056 ATGGCAAAAACTCCTTGTTGTGAAAGGATGGGAATGAGGAAAGGACCGTGGAGTGCTGAAGAAGATCAAATATTGATTTCTCACATTCAAACATATGGTCATGGAAATTGGCGTGCTCTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGTAAGAGTTGTAGACTTCGTTGGATAAATTACTTGAGACCAGATATCAAACGAGGGAAATTTAGCAAGGAAGAAGAAGATTCCATCCTAAAGCTGCATGAAATTCTCGGAAATAAATGGTCTGCAATTGCAACAAGATTACCAGGACGAACGGATAATGAAGTCAAGAACTTTTGGCACACACATTTGAAGAAAAGGGTTCAAAAAAGTAAAGTGTACAATGTCAATACCTCCTCTTATTCCTATACTTTGGAAGAGGCACAAACAAGTGATGGTTCTAGTGTTGGTGAAAAAAGAGTTATTTCCAATTATGGTTTAGTCTCAAGCAAGGATCCAAACACTGTAGGGTCAGGATTTCACAATGCAAACTCTTGTGATACTTTAGGAGAAAATATGGACAATCACGGTTCAAATCAGATTAGTGAAGAAATGGAATTTTGGTACCATGTATTCATTAAATCAGGGCAACCATCATGA 624 0.3782 MAKTPCCERMGMRKGPWSAEEDQILISHIQTYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDSILKLHEILGNKWSAIATRLPGRTDNEVKNFWHTHLKKRVQKSKVYNVNTSSYSYTLEEAQTSDGSSVGEKRVISNYGLVSSKDPNTVGSGFHNANSCDTLGENMDNHGSNQISEEMEFWYHVFIKSGQPS* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g5056 207 CDD SANT 69 112 IPR001005 -
Mal3g5056 207 SMART sant 66 114 IPR001005 -
Mal3g5056 207 SMART sant 13 63 IPR001005 -
Mal3g5056 207 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 205 - -
Mal3g5056 207 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Mal3g5056 207 PANTHER MYB TRANSCRIPTION FACTOR 1 205 - -
Mal3g5056 207 CDD SANT 16 61 IPR001005 -
Mal3g5056 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal3g5056 207 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal3g5056 207 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal3g5056 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal3g5056 207 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal3g5056 207 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal3g5056 207 Gene3D - 14 66 - -
Mal3g5056 207 Gene3D - 68 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g5056 Mal-Chr3 130654330 130655360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g5056 1 138 MYB Transcription Factor Family AT1G06180 66.667 2.46e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g5056 Myb_DNA-binding 7.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g5056 K09422 - gmx:102663040 305.834