Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g5025 ATGGTTGTGAAAGTAAAGAGAGAAAGTCTTGAAGCATGCATGACATGTCCTCTTTGTCATAAGCTACTCAAAGATGCTACCACCATATCTCTATGTCTTCACACTTTTTGCAGGAAGTGTATACATGAGAAACTTTCAGATGAAGAGGTGGATTGTTGTCCAGTATGCAACATTGATCTGGGCATTCTTCCTGTCGAAAAGCTCAGGCCTGATCACAATCTGCAAGATATTAGGACCAAAATATTCCCATTTAAACGACAAAAGGTTAAAGCTGAAGAAGTTGTTCCCTCAACACCCCTGCCAGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGGTCAGTGCTCCCAAAGTTTCCACACATACCAGCTTTACAGGAAAGAGAACAAAAACTGCTACAAGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTATCTCCGAAGAATCTATAAAGAAAGAAAAAACACACAATGAAGATAATCTGGATTCTTCAATAGCTGAGACTTCTAAGAAGCATAGACCCAATGAAGATACGGACAACAATATAGACCTTACAGAAGGGAAGGCTGATCTCTGGACTCCCTTGAACTGTCTCGTTGAAGCGGCAAATAGAACCAAGTCATCCAGGTCGAATTTACAAGGGAATCCTCTTGCCAAATCAGAGTCTCCAGCTACTCCTCTTGGTGGACTAGAGATGTCTGAAATTACAACCAAATCAGAGCCACCTACATCTGTGCAGAGTGAGTTACACATGCCTAAAACCAAGAACAAGAGTAATGGACATAAAACAAATTTCGGAGATGACAAGGGCGGAAACACCTTGCCTTCAGGACCGGTGAAGCGAAAGAGGCTGCGTCCTTCTAATAAGAAGAAAGCAGCAGCATCTGAGATGTCTGCCTCAGCACAACTCATGTTAGATGCAACAGGGAGCAGGTGTAACAGGAAAAACAATCCTATTTGGTTTACATTAGTTGCTTCAGAAGACCAGAATGGAGAAGTTTCCTTGCCACAGATCTCGGCTTGCTATTTAAGAATAAAGGATGGTACTGTGCCCGTCTCGTTTATTCAAAAGTACCTCATGAAGAAACTTAACCTTGCTAGCGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCTGTCCTCCCAACTTTGCAACTGCATAACTTAGTAGATCTGTGGTTCTGCACAGCATCAACATCGAAAAAGTTACCGGCATCTGTGGGCTCTTCGGCTAAGGACTTTGTGATGGCTTTATCGTACTGTCGAAAGACCTTACCTCATTGA 1287 0.4289 MVVKVKRESLEACMTCPLCHKLLKDATTISLCLHTFCRKCIHEKLSDEEVDCCPVCNIDLGILPVEKLRPDHNLQDIRTKIFPFKRQKVKAEEVVPSTPLPAKRKERSLSSLVVSAPKVSTHTSFTGKRTKTATRKAAALRGCSFISEESIKKEKTHNEDNLDSSIAETSKKHRPNEDTDNNIDLTEGKADLWTPLNCLVEAANRTKSSRSNLQGNPLAKSESPATPLGGLEMSEITTKSEPPTSVQSELHMPKTKNKSNGHKTNFGDDKGGNTLPSGPVKRKRLRPSNKKKAAASEMSASAQLMLDATGSRCNRKNNPIWFTLVASEDQNGEVSLPQISACYLRIKDGTVPVSFIQKYLMKKLNLASEAEVEIMCRGQPVLPTLQLHNLVDLWFCTASTSKKLPASVGSSAKDFVMALSYCRKTLPH* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g5025 428 MobiDBLite consensus disorder prediction 151 186 - -
Mal3g5025 428 Gene3D - 297 405 - -
Mal3g5025 428 SUPERFAMILY RING/U-box 10 80 - -
Mal3g5025 428 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Mal3g5025 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 108 IPR013083 -
Mal3g5025 428 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 2 425 - -
Mal3g5025 428 SMART ring_2 16 56 IPR001841 -
Mal3g5025 428 MobiDBLite consensus disorder prediction 206 300 - -
Mal3g5025 428 MobiDBLite consensus disorder prediction 237 254 - -
Mal3g5025 428 MobiDBLite consensus disorder prediction 151 185 - -
Mal3g5025 428 MobiDBLite consensus disorder prediction 206 221 - -
Mal3g5025 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 IPR044807 GO:0004842
Mal3g5025 428 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Mal3g5025 428 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g5025 Mal-Chr3 130338807 130343892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g5025 1 347 C3H Transcription Factor Family AT2G30580 44.780 2.83e-85 262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1121 1 13928080 13931382 Mal3g5025 3 130338807 130343892 ECH
Mal3g5025 3 130338807 130343892 Mal3g5025 3 130338807 130343892 ECH