Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g5007 ATGTTGGATGAAGGAGAAAGAGCAGAGCAGTTTGAATTTGAGCAATTGAGGACTACTACTAGTCTTCTTCCACTTCTTCATCCATCTTCTTCTTCTTCTTCTTCTTCTGCTGCAAACATCAACAACAACTTCCACCACATACCCTTAATTATTCTTCCTAATTACAACAACAACAACAACAACCCTTCTACTTCTACTTCCAATTCTCATTCTCTTCATGATATTCAATTTCCACTTCAAACTCTAACTCAAACAAACCTCTTCCACTCATCAATATTATCATTGCCCCACCACTCTCCCAACACCACTACCTTTAATTCTAACGCAATTAACTTCCAGATCCAAACAAATCATCATCAATTACCAACACCGTTGATCGATTCCAGCTGGACCAACGATGAAATTCTTGCACTCTTCAAGATCACATCTACCATCCACAATTTCTTCCCAGATCAACTCATCACATGGGACCATGTCTCAAGTAAGCTAGCTGAGGTTGGGATCAAGAAGAGTGCTGAGAAGTGTAAGGAGAAGTTTGAACATGAGAACACATTATTTTTTAAGATTCATAACAATCATAATGATAATAACTTCACCGGGTTTGTTAGTGAGCTTCAAGATCTTTATCAAGGTGGTGGTGTTGCTATTGATGAAAAGGAAAACACCCAACACGAAGAAAAAATTTCCAGAAATGATATAGTAGTGACCAAACAATGTGACGATGAAGACAAGGTGATGATGGAGAAATCAAAGAACAAAAAGAGGAAGAGGCGCCGTGATAGATTTGAAATGTTGAAGAGTTTTTGTGAGAAAGTGGTTAACAAAATAATAGCACAACAAGAAGAAATACACAATAAGTTACTTGAAGACATGCTCAAAAGAGATGAAGAGAAGCTAGCAAGAGAAGAAGAATGGAAAAAACAAGAGATTGAAAGGATGAACAAGATGGCACAACAACAAGCTATTGCAAATGATAGACAAGCCAACATCATTGAATTCTTGAACAAATATCTAGCCACAGGATATTCTTCTTCTTCTTCTTCTCAATTGCACTCACAAAACCCTAATAATGCTTCTAACAATCTTGATTCAACAACACCTTGTTCTAATGTGGTAGCAGATCAAAACCCTAGCTTAAGTGACGCAGAGTACTCAAATTCCACTTTTACCCTTGTTGTGCCTACAATAATGGAGAAATTAGAGATTAAGAGAAGGTGGCCAAGAGATGAAGTGTTGGCACTCATAAACCTCAAGTCTACTACAACTGTATTAAACAAAAGCAACAATAATAATGTTGAAGAAAAAGAATTAGGAAACTATAAGGGACCTTTGTGGGAGAGAATCTCTGAAGGGATGTCAGAGTTGGGATACAAGAGAAGTGCAAAGAGGTGCAAAGAAAAATGGGAAAACATAAACAAGTATTTTAAAAAGACAAAGGATGGTGTGAATAAGAAGAAAAGGTCATTGGATTCCAGGACTTGTCCTTATTTTCATCAACTCACTTCTTTGTATAATAAGCAGCAGCAGCAACAAGAGGAGGGAAAACTAATTGCTCAGTCATCTGATTCTCCAATGGGGTCTGATGTGGTATAA 1593 0.3716 MLDEGERAEQFEFEQLRTTTSLLPLLHPSSSSSSSSAANINNNFHHIPLIILPNYNNNNNNPSTSTSNSHSLHDIQFPLQTLTQTNLFHSSILSLPHHSPNTTTFNSNAINFQIQTNHHQLPTPLIDSSWTNDEILALFKITSTIHNFFPDQLITWDHVSSKLAEVGIKKSAEKCKEKFEHENTLFFKIHNNHNDNNFTGFVSELQDLYQGGGVAIDEKENTQHEEKISRNDIVVTKQCDDEDKVMMEKSKNKKRKRRRDRFEMLKSFCEKVVNKIIAQQEEIHNKLLEDMLKRDEEKLAREEEWKKQEIERMNKMAQQQAIANDRQANIIEFLNKYLATGYSSSSSSQLHSQNPNNASNNLDSTTPCSNVVADQNPSLSDAEYSNSTFTLVVPTIMEKLEIKRRWPRDEVLALINLKSTTTVLNKSNNNNVEEKELGNYKGPLWERISEGMSELGYKRSAKRCKEKWENINKYFKKTKDGVNKKKRSLDSRTCPYFHQLTSLYNKQQQQQEEGKLIAQSSDSPMGSDVV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g5007 530 Coils Coil 278 298 - -
Mal3g5007 530 CDD GT1 404 479 - -
Mal3g5007 530 ProSiteProfiles Myb-like domain profile. 403 472 IPR001005 -
Mal3g5007 530 MobiDBLite consensus disorder prediction 344 379 - -
Mal3g5007 530 PANTHER - 22 341 - -
Mal3g5007 530 PANTHER - 347 515 - -
Mal3g5007 530 Gene3D - 130 188 - -
Mal3g5007 530 Gene3D - 406 477 - -
Mal3g5007 530 Pfam Myb/SANT-like DNA-binding domain 404 502 IPR044822 -
Mal3g5007 530 Pfam Myb/SANT-like DNA-binding domain 128 196 IPR044822 -
Mal3g5007 530 SMART sant 402 474 IPR001005 -
Mal3g5007 530 SMART sant 126 185 IPR001005 -
Mal3g5007 530 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 22 341 - -
Mal3g5007 530 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 347 515 - -
Mal3g5007 530 MobiDBLite consensus disorder prediction 506 530 - -
Mal3g5007 530 Coils Coil 300 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g5007 Mal-Chr3 130117081 130118933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g5007 130 506 Trihelix Transcription Factor Family AT5G28300 39.655 3.03e-77 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mal3g5007 Myb_DNA-bind_4 6.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g5007 - - mtr:MTR_7g114860 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g5007 3 130117081 130118933 Mal1g1348 1 17455081 17457253 PCT