Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4965 ATGGCGAATGATGATGATCAGAAAGATTATTGTATATGGGACCCTAAAACAAGCCCTGCTAACAGACTAAAGAAGAAGATCTCAATTGAAGATGCTTTTTTTAATGCTAAACACAAACCTGCTTCTGCCCAAGGTTGCATCAGTGGCTTGGATGGTAATCAACAATCTGAATTGGCTACTAGTTGTTCAAACTTGAGGGCAAGATTTCAATGGGACAAGGCATTGAAGCTATGGAAAAAAAGATCAATTAATCACACATCCTCCTTCCCTCCTTTTAGTGTGCCGATACCAAATACAGAAAATCCTACTCTATCTAATTTATGCAACTTCAGATCTTCTTTGGTGAATTTCACCCTCTCTGAACTCAGAAATGCAACCAACAATTTTAGCAAAGAAAATTTAATTGGGAGAGGAGGATTTGCTGAGGTTTACAAGGGTCGTCTCTTAGATGGACAGCTGATAGCGGTTAAGCGGCTGAATAAAGGGACTTCAGATGAGAGGACATCAAACTTTCTATCTGAGCTGGGCATCATTGTTCATCTAAACCATCCTAACACTGCCAAGCTTATTGGATGTGGTGTAGAAGGAGAAATGCACCTTGTATTTCAACTATCTCCATTGGGAAGTTTAGATTCTCTTCTTCATGGTTCCAATAAAAACCAATTAGATTGGACTAAAAGGTATAGAATAATTGTGGGGATTGCTGATGGACTCCTCTATCTTCATGAAAATTGTCAAAGGCGAATCATTCATAGAGATATTAAAGCAGACAATATTCTGCTCACAGAGAACTTTGAGCCTCAGATTTGTGATTTTGGACTTGCAAAGTGGTTACCAGAACAATGTAGCCACCATAATGTATCAAAATCTGAAGGCACATTCGGGTATTTTGCTCCTGAATATCTTATGCACGGCATAGTCGACGAGAAAACTGATGTTTATTCTTTTGGTGTCCTTCTTTTGGAGATTATAACTGGCCGTCGGGCCTTAGATCATTTGGACCAAAGTCTCGTGTTAACGGCAAAACCTTTGCTTGATGCTAATAACATCAAGGACCTTGTTGATCCTTCTCTTGGAGGTGATTATGACCAAGAACAAATGGATCGTGTTGTTTTGACCGCATCTTTGTGTGTTGAGAACTCTCCTATCTTACGCCCCCGTATGAGTCAGGTTTCAATACTGCTAAGAGGTGATGACTAA 1200 0.3967 MANDDDQKDYCIWDPKTSPANRLKKKISIEDAFFNAKHKPASAQGCISGLDGNQQSELATSCSNLRARFQWDKALKLWKKRSINHTSSFPPFSVPIPNTENPTLSNLCNFRSSLVNFTLSELRNATNNFSKENLIGRGGFAEVYKGRLLDGQLIAVKRLNKGTSDERTSNFLSELGIIVHLNHPNTAKLIGCGVEGEMHLVFQLSPLGSLDSLLHGSNKNQLDWTKRYRIIVGIADGLLYLHENCQRRIIHRDIKADNILLTENFEPQICDFGLAKWLPEQCSHHNVSKSEGTFGYFAPEYLMHGIVDEKTDVYSFGVLLLEIITGRRALDHLDQSLVLTAKPLLDANNIKDLVDPSLGGDYDQEQMDRVVLTASLCVENSPILRPRMSQVSILLRGDD* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4965 399 PANTHER OS08G0249100 PROTEIN 4 399 - -
Mal3g4965 399 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 4 399 - -
Mal3g4965 399 SUPERFAMILY Protein kinase-like (PK-like) 104 392 IPR011009 -
Mal3g4965 399 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524
Mal3g4965 399 Gene3D Transferase(Phosphotransferase) domain 1 206 398 - -
Mal3g4965 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Mal3g4965 399 ProSiteProfiles Protein kinase domain profile. 129 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal3g4965 399 SMART serkin_6 129 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal3g4965 399 Pfam Protein tyrosine and serine/threonine kinase 132 339 IPR001245 GO:0004672|GO:0006468
Mal3g4965 399 Gene3D Phosphorylase Kinase; domain 1 96 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4965 Mal-Chr3 129691269 129695113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4965 114 397 Receptor kinase-like Gene Family AT1G53420 44.710 1.90e-72 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Mal3g4965 PK_Tyr_Ser-Thr 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4965 - - cam:101512181 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1392 1 18005711 18008929 Mal3g4965 3 129691269 129695113 ECH
Mal1g1801 1 23591281 23593777 Mal3g4965 3 129691269 129695113 ECH
Mal4g4268 4 119850936 119854032 Mal3g4965 3 129691269 129695113 ECH
Mal3g4965 3 129691269 129695113 Mal3g4965 3 129691269 129695113 ECH
Mal3g4965 3 129691269 129695113 Mal1g1392 1 18005711 18008929 PCT