Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4953 ATGGCACTAGAACCAACTCTACTATATCCACAACAAGACCCTTTTACCTATGGATTCAACAAAGACTTCTACAACTACAACCTGTTAACAGATTCTGAAGCAAACTTTGAGTATACAAACTTCAACCTTGGAAATGAAGAACAAGGTTCTGTTTCCACTTTTCTCAAGAACCAACAAACAGAGAATTTTCCTTATGGAAATTGGAGTACTAGCAATTGTTCATCATCACCACAATCATTGTTACCACACATGGATGAAGTGTCAAATCCATCTTTAGATAGTTCAATTTCAACTCGTTCTCGTTCCAAAAGACGAAGAGTTAAAACAAGTAAGAATAAGGAAGAAATTGAGAATCAGAGAATGACTCACATTGCTGTAGAACGCAACAGGAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTAGATCTCTCATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCAATTATTGGTGGAGCTATTAACTTTGTTAAGAAGCTTGAGCAGAAGCTACAATATCTTGGTGTTCAGAAACAAAAAGTGGGTAAATTTGATACTATTGTTGAAAATAAAAACAAGCCCTTTTCTGAATTTTTCACCTTTCCACAATACTCAACAAGTGTTGATTTGTGTGAGAGTTCTGAGACAAAAATGGGTGAGATTGAGAAAATGAGTGGTGAAGTTCAATCTAGCAATATTGCTGATATTGAAGTGACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCAAAGAAAATACCAAAACAGCTCTTGAAGATGGTTTCTAGTTTGCATGGATTGTGTCTCACAATATTGCACCTTAATGTCACTACATCTGATGAATTTGTCTTCTATTCTTTCAGTGTTAAGTTGGAAGATGATTGCAAGCTTGGATCAGTGGATGAGATAGCTGCAGCTTTATACCAAATGTTGGAAAGGATTCAACAAGAGTCATTAATATTGAATTAA 978 0.3569 MALEPTLLYPQQDPFTYGFNKDFYNYNLLTDSEANFEYTNFNLGNEEQGSVSTFLKNQQTENFPYGNWSTSNCSSSPQSLLPHMDEVSNPSLDSSISTRSRSKRRRVKTSKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKKLEQKLQYLGVQKQKVGKFDTIVENKNKPFSEFFTFPQYSTSVDLCESSETKMGEIEKMSGEVQSSNIADIEVTMVESHANLKIRSKKIPKQLLKMVSSLHGLCLTILHLNVTTSDEFVFYSFSVKLEDDCKLGSVDEIAAALYQMLERIQQESLILN* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4953 325 SMART finulus 124 175 IPR011598 GO:0046983
Mal3g4953 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 169 IPR011598 GO:0046983
Mal3g4953 325 Gene3D - 100 185 IPR036638 GO:0046983
Mal3g4953 325 MobiDBLite consensus disorder prediction 74 114 - -
Mal3g4953 325 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 323 - -
Mal3g4953 325 PANTHER MAX DIMERIZATION, MAD 1 323 - -
Mal3g4953 325 MobiDBLite consensus disorder prediction 74 97 - -
Mal3g4953 325 Pfam Helix-loop-helix DNA-binding domain 119 170 IPR011598 GO:0046983
Mal3g4953 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 181 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4953 Mal-Chr3 129568697 129570065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4953 1 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.815 5.29e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal3g4953 HLH 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4953 - - gmx:100782243 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4953 3 129568697 129570065 Mal3g4953 3 129568697 129570065 ECH
Mal3g4953 3 129568697 129570065 Mal1g1404 1 18144359 18145870 PCT