Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4952 ATGAAAAACGATCCAACCAATGACTCCCACGTGTTCATCCTCTTCGGAATCCTTCTTCTCTCCGCCACAAAAGCCCAAGCCCAAGACCGAAACCAAACTGATCCAAATTTCAACCAAGAATTTAACCCTTCCTTCGCTATAATCATAGTCATATTAGTTGCTGCTCTTTTCCTCATGGGCTTTTTCTCCATCTACATCCGTCGCTGCTCAGATTCACCTTCATCCAACCTCGTTCTCCCTATCACCAACGGCCGTAGAGCGGCGGCGCGTGGTCTCGATGCATCAGTAATCGAAACTTTCCCGATTCTAGAATACTCTGAAGTCAAGATCCACAAGATCGGAAAAGAGGTTCTCGAGTGTGCCGTTTGTTTAATGGAATTCGAAGACACCGAAACTCTGCGTTTGATTCCAAAGTGCGATCATGTTTTTCACCCTGAGTGCATCGATGAGTGGTTATCTTCACACACAACGTGTCCCGTTTGTCGAGCGAATCTCGTTCCTCAACCCGGTGACTCAGTTCACGGCGTTCCTGAGTCGAATACCGAGTTGCAACAAAACGTTGAAGCTGAAAACGACGCCGTTCAAACGCCGGCGGAGGAACAAAACGCGGAAGCTGAACCAGTCTTACTTGCTCCAGAAGTGATTTCATTGGATAAAACGCTGAACCGGAATCGTACGCGTGGATCTCAATCGAACCGGCCACGTCGTTTTCCGCGGTCTCACTCAACCGGACATTCTTTAATCCAACCGGGTGAGAACACGGACCGGTTCACTTTGAAACTGCCTAATAAGGTAAGGAAACAGATAATGAACCGGCAATTGCAACGGGCGAGTAGTTTGATTACTTTACCAAGAGAAAGTAGCTCGAGACATGGTTACCGAACCGGAGGTGAAGGAAGTAGCAGAGGGAAAAGTTTGAGACGGTTGGACCTGGGTTTTAAATCAGACCGGTGGATATTTAATAGAGCACCGTCGTTTTTAGCGAGGGCATTGTCGTTTAGATCACCAAAGCCAAAAGTCAATAATAGCGATGATGAAGGAACTTCTTCTGCTGCTGCTCCTATCATGCCATCATCGGCTGTTGACTCTGCCCGCCCTCAGATTTGA 1107 0.4761 MKNDPTNDSHVFILFGILLLSATKAQAQDRNQTDPNFNQEFNPSFAIIIVILVAALFLMGFFSIYIRRCSDSPSSNLVLPITNGRRAAARGLDASVIETFPILEYSEVKIHKIGKEVLECAVCLMEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPQPGDSVHGVPESNTELQQNVEAENDAVQTPAEEQNAEAEPVLLAPEVISLDKTLNRNRTRGSQSNRPRRFPRSHSTGHSLIQPGENTDRFTLKLPNKVRKQIMNRQLQRASSLITLPRESSSRHGYRTGGEGSSRGKSLRRLDLGFKSDRWIFNRAPSFLARALSFRSPKPKVNNSDDEGTSSAAAPIMPSSAVDSARPQI* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4952 368 MobiDBLite consensus disorder prediction 335 368 - -
Mal3g4952 368 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 308 - -
Mal3g4952 368 MobiDBLite consensus disorder prediction 216 255 - -
Mal3g4952 368 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Mal3g4952 368 CDD RING-H2_EL5_like 119 162 - -
Mal3g4952 368 Pfam Ring finger domain 119 162 IPR001841 -
Mal3g4952 368 MobiDBLite consensus disorder prediction 285 305 - -
Mal3g4952 368 PANTHER RING FINGER DOMAIN-CONTAINING 1 308 - -
Mal3g4952 368 SUPERFAMILY RING/U-box 119 169 - -
Mal3g4952 368 SMART ring_2 120 161 IPR001841 -
Mal3g4952 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 167 IPR013083 -
Mal3g4952 368 MobiDBLite consensus disorder prediction 336 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4952 Mal-Chr3 129550698 129551804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4952 13 330 Rapid Response to Elicitors AT3G05200 48.649 4.43e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4952 K10664 - gmx:100781706 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4952 3 129550698 129551804 Mal3g4952 3 129550698 129551804 ECH
Mal3g4952 3 129550698 129551804 Mal1g1405 1 18186367 18187476 PCT