Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4946 ATGGATCATCAAGGGCATAACCAGAATCCGCAAATGGGGGTTGTCGGTAGCGGAGGTCAAATGCCGTACGGATCTAACCCATATCAGCCAAACCAAATGACTGGGGCCCCAGGATCAGTTGTTACATCAGTTGGAGGCATGCAGTCCACTGGTCAACCTGCTGGAGCTCAGCTGGGTCAGCATCAACTTGCTTATCAGCATATCCATCAGCAGCAGCAGCAGCAACTTCAGCAACAGCTGCAAGCCTTCTGGGCAAATCAGTACCAAGAAATTGAAAAGGTTACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCACCTGTCATATTTGCAAGGGCCTGTGAGATGTTCATATTGGAGTTAACTCTGCGCTCTTGGAACCACACTGAAGAGAACAAAAGGAGGACACTTCAGAAGAATGATATTGCTGCTGCAATCACAAGGACTGATATCTTTGATTTCCTGGTTGACATTGTGCCTCGTGAGGACCTGAAAGATGAAGTGCTGGCTTCAATCCCAAGAGGAACAATGCCTGTTGCTGGGCCTGCTGATGCTCTTCCTTACTGCTACATGCCACCTCAGCATGCCCCCCAAGTTGGAACTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTATGCTCAGCAACCTCATCCCTACATGGCACCTCAGATGTGGCCACAGCCTCCAGAACAGCGACCACCATCTCCAGATCACTAG 783 0.4904 MDHQGHNQNPQMGVVGSGGQMPYGSNPYQPNQMTGAPGSVVTSVGGMQSTGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAPQVGTAGVIMGKPVMDPNMYAQQPHPYMAPQMWPQPPEQRPPSPDH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4946 260 MobiDBLite consensus disorder prediction 243 260 - -
Mal3g4946 260 MobiDBLite consensus disorder prediction 1 15 - -
Mal3g4946 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 260 - -
Mal3g4946 260 SUPERFAMILY Histone-fold 66 173 IPR009072 GO:0046982
Mal3g4946 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Mal3g4946 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 260 - -
Mal3g4946 260 MobiDBLite consensus disorder prediction 1 22 - -
Mal3g4946 260 MobiDBLite consensus disorder prediction 235 260 - -
Mal3g4946 260 Pfam Core histone H2A/H2B/H3/H4 67 164 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4946 Mal-Chr3 129473897 129474679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4946 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.500 2.98e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mal3g4946 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4946 K08066 - gmx:100527803 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4946 3 129473897 129474679 Mal3g4946 3 129473897 129474679 ECH
Mal3g4946 3 129473897 129474679 Mal1g1413 1 18345013 18345783 PCT