Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4925 ATGTCAGATTCAGAATCAAATTCAGAGGTTTTCAGTGTTCGAATTGTCTCCATAGACCATTACATGTTACCTCCAATCCCCGCCATCGATATCTCTCACAGCACCTTCCATCGTGGAAAAGTGAACGAAGTTCCTGTAATAAGAGTTTATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACATTCATGGAGCTTTACCTTATTTATATGTGCCGTGTTCAGATATACCACTTCAACTAGACCAAGAAGGTGATGCATACACCTATATGGTAGCTGCTTCTCTCGAGAAAGCCTTGAAGCTTAAAGGCAGTGCTGGTTCATCGAGACAACATGTACATGGCTGCAGCCTTGTCCGAGCAAGGAAATTTTATGGCTATTGCTCATCTGAAGAGTTTTTTGTAAAGATTTACCTATATTATCCTCAAGATGTCTCTCGTGCAGCAAATCTTCTCTTGGCTGGTGCTGTTCTTAATAAAAGTTTACAGCCTCACGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTACACCTATCAAAGATGAGGTTCCGCCATCCCATACCGGATTCTATTCACAAGAAGTTAGACATCAATAGCCAGCACATAAAGGCAGATCCAGGCGCTGAGGCATGTTTAGAGTCAAAAATATGGATGTCTTCCAAGATCTCATTCGACTGGATGTGGTCACTCCCTAGTGAATCTGGTGCTTCATCAAATGACAAGGCTCACAGTCCTAAGCGTCAAAGCATCTGTGAGCTTGAGGGAGATACTTCTATAGATGAGATTCTTAATCAGCAGTTTAAAATGTTTTCATCTCTCTCACAAACAAGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCGGAAGCGGTCGGGGATTCATGAGGCTACTATGCTTTCTGATTCTGGTAAACCACTACCAGAAGATGTCGTGAAACTTCTCTCATCTGGTCTTGACTTTGAGAAAAAACTTATTCAATTGTGCAGTGAAGCTGAGACCACTTTATCTTGCACTCCTCTTGAGAAGGAACTCAGAGAAACAGACATAATAGGCTCAGCATCGCCGCCAGCTTCATTATGTGACAATGCCAAATTGCTAGAGGAAAGGACCGACACAAGTCTCAAGTTGTTGAGTCAAATGCAATCAGCTGAAAAGATCGAAATGTTGGACATAAAGGATGCTGATATGGAAGCACAGAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCCGCAGAGGATATAAACTCTGATGATGAACTAGCTTGTGAAACAATCTTGAGTCCCTTGCCACCTGCTGCAACAATTGATAAGATGTTGGAGAAAGCAAATATGGCTTATGAGAGTGAGTCCCAGCAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTAGACCTGCCAAAGAAAAAGCCTTGTCGTTCCTTTGATCACAATTGTCCTATTGAAGCTTCATCAGACAGTATGATACCTCAAGTTGATGGTTCTAACGATGATGAATTCTCAAGTCCATGTTCTAGTTTGGCAGGAACCTCTTCTGCAGTTGAGATAAACAATGAATACAAAAGAGCTTCTGAGTACCACTTACTGCGCAATACTGACACAAGTACAGTGAGCACAGATAAAAGGAATAGACAATGGGGGTCTTTGCCTTTTTCCATGACCGGGAAGGTTAATAATGATGGAGAGCATGCTACCTCACAAGCAGCTCATCTGTTTGAACGAGAAACCAAAGATTCTGCTCTGTCAGACTTAACCAGAAATGAGGTTAAAAATAATACATGTATTAAAAGAAATGTTGACGAAGGTGCCTCATATTCAAAAGAAGTACATAGTTTGGTTAACTGCTCGTTAAGGGACTTGATGAGGAGAAAGCGATCCTATCGAGTTGAACATGACGAACGAGAATCTGGAACTGCAAAGAAGCTTAATTTGGATAGGCATGGGGGGACAAAAACATGCCTTTGGCCAAAACTTGAATTGGAAACAATGCAAACTGATGAAATAGAAACAGAACTCCAGAAAAATTCTGATCATGAAGTGAGAAGTCGTGATAATTTAGTGTGTGGGAAACAGTCGCTTCCATCTGGCAGTGATAGTTTTTTGAATATGTCAAAAGATGAATGTTTAGGTCAACATGAAAGGGAGTGTCTAGAAGCAAGTATGGTGTTGAAGAACTCCACAACTCAAAGTTCTTCTTCAATGCATGAAGGGCCGGTCCTGCTTGAAACTTCACATTTTATTGATTCTATGGACAAATCTGTGGCTTGCAGGGAGAAAAACACTAAGGATGGAACAACTTATGAAAAACATGTAGCTTCTGATGCCTATACCCCAAATCCCTCTTTAGACACTCAGTTGAGAACTGATGATGATCATAAAGTCAGAGCTCCTGAGAGGTGTCAGCAAACTGATTCTGCTGCTTCAGGCAGACAGAACTCATTTGTCGATGACAAAGTGTTGGGAAAAAGTAAGTGCGTTGATAAAACTTCTTGTGGTAGCATATGTTTTGTGCAGCATGATCAGATGAAGTCTTACGAGCATGCTGTGGGAAAAAGTGCTGCAAGTGACACAAGAGTATTGCTTAGTGAAAAGGTTGATAATCAAAAGCTGGATAAAAATTTGTTGTGTGAGACTGTTGGTTCAGAAGCTATTGTTGATGACCTGAAGAGTAATCACATAAAATTAACTGAAGTAACCATAGGCAATAGCTCTTCGTTTGACAAAAATCTTGAAAGTAATTTGTCCTTGCCAACCTTCTCTGATACCCATTCACATATGGACGAGGATGATGATATGCCAGGGAATGCTCTGGATGTTTTATTTCCTATTTCTGCAAGGAATTCCCAGAAACAGATGGAATCTTGGAACAAGTGTGTTACTCTTAAAACCCCCGGATCCTCTGGGACAAACGGTGTTTCCACTTACTATCAAAATGATGGCTCTCACCTATACATGTTAACACCTAATATTTTGCCTCCTTCTGTCAGTTCTGTGCAGCGATGGCTATTTTGTGATGAGAGAGAGGACCAGGATGGACCTAAATGCACTTCTGGACCTCCTCTTAGGCATAATACTCCTGATCAAATGCGTCAAGAGCCTGGTGCAGAGAACAAGGATGTGTCTAAATGCGCTTCTGGACCTCCTCTTAGGCCTGAGCTGTATCAAGATGCTGGCCCAGAAAAGAAGCTTCCATGCATTAGCGAAGGACAAACAGAAGGAACAAAAGCATGCATGGATCACTCTCAAGACATTTCTCAGATATCAGGCCCTGATAAGAAATCAAGTTTTACTCCTCTAAGCCAAATTGGATTTCGTGATCCTGCAAGTGTTGGCCGTGGACAGCAATTGACATTACTTAGTATAGAGGTGCTTGCAGAATCTAGAGGAGATCTTTTACCTGATCCTCAATTTGATGGTGTAAATATTGTAGCTCTTGGTTTTCAGAACGATTGTGATGCTACTATTGAAAATCTAGTTCTTGTGCACAGTAAATTTGCACCTTGTCAGAGAAGTTTTGATGGTCTATCAGACTGCAAAGTACTGAACTTCACTGATGAGAAGCACTTGTTCAAAGAATTTATGAAGATTGTGTCTTCATCTGACCCAGATATATTGATGGGTTGGGATATTCAAGGGAATTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTGGGATTACTTAATTATTTGTCTCGCACTCCATCTAATTCTTGGATTAATTCTCAAGACACTGAAACATCTGAAAAAAGTATCTTGGAACCGGACATCCCAGATACTCCTAGTCTAGATTGTTGTGCGCAAGAAAGTTCAGTAATTGATGATGAATGGGGGAGGACACATGCTAGCGGAGTTCATGTAGGTGGAAGAATTGTCCTTAACTTATGGAGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGGAAAGTTCCTTCACTTAACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCGGGGCAAGCAAGATATCAGTGTATCAAATATGTTGTGGATAGAGCAAAGCTGAACTTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCGGAACTTGCACGCGTCTTTGGAATAGACTTTTTTTCTGTTCTTTCTCGAGGCTCACAATACCGTGTTGAATCCATGTTTTTGAGGTTGGCCCACACCCAAAACTACGTCGCTATCTCGCCCGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCGCTAGTAATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTTGTACTTGACTTCCAATCTTTATATCCGTCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGTGCCATCAAAGACCAACACCCTTGGGGTTAGTCCATTTTTACCAGAGCAACGTATTCTTCAGGATTTAAAAGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCAAAGAGGTGTGCTTCCCCGTCTATTGGAAGAAATTTTATCAACTAGAATAATGGTAAAACAGGCAATGAAAAAGTTGTCTCCTTCAGAGCAAGTCCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTCATATCAAATGTAACGTATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGCATCGTTCAATGTGGACGCTGTACACTGGAAAAGGCTATATCATTTGTAAATCAACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACCGTCAAAGAGTCCTTCCAAATTGGGAGTGAGATTGCGTCTGCTATCACTGCTATGAATCCTAGTCCCGTCACCTTGAAGATGGAGAAAGTTTATTACCCGTGTTTCCTCGTTACTAAAAAGCGATATGTTGGCTACAGTTATGAGAGCCCCGATCAAATTGAACCTGTTTTTGATGCCAAAGGTATTGAAACAGTACGCAGGGACACATGTGAAGCAGTTGCAAAGATAATGGAGCAATCTTTGAGATTTTTTTTTGAGCACCAGAGTTTATTGGAGGTAAAGGCTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCGGGCAGAGTTTCCCTTAAGGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACTTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCAACTAAGGCAATGAGGGTTGATCGTAGGGCTGAACCACGTTATGCAGAGAGAATACCTTACGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTAGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCTATTGATTCCCCATTCAGAATAAATGATTTATATTACATAAATAAACAAATAATACCGGCTTTACAGCGAGTATTTGGGCTTGTTGGTGCTGACCTGAACAAGTGGTTTACAGAGATGCCTCGCCCTATAAGAGAAGCTTCTGTAAAGCATGCGTTCACGCCAAACTTCCAACGGACCAGAATTGATTATTACTATCTCTCAAAACATTGTGTACTCTGTGGTGAGTTGGTCCAGGCATCAGCCCGTTTATGCAATCAATGTTCTGAAAATGAGGTGGCTGCTGCGACAGCGGTGATTGGTAAAACTTCGAAGTTGGAGCAAGAGATGCAACATCTTGTGTCTATATGTCAACACTGTGGAGGCGGTGATAGGCTTCTCGAAAGTGGTGTGAAGTGCACATCGATTTCATGCTTGGTGTTTTATGAGAGGCGAAAAGTTCAGAAAGAGCTACTAGCTGCCACCCACGTTGCTTCAGATAAAGGCTTCTATCCAAGATGCACGGTAGAATGGTTTTGA 5988 0.415 MSDSESNSEVFSVRIVSIDHYMLPPIPAIDISHSTFHRGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYLYVPCSDIPLQLDQEGDAYTYMVAASLEKALKLKGSAGSSRQHVHGCSLVRARKFYGYCSSEEFFVKIYLYYPQDVSRAANLLLAGAVLNKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPIPDSIHKKLDINSQHIKADPGAEACLESKIWMSSKISFDWMWSLPSESGASSNDKAHSPKRQSICELEGDTSIDEILNQQFKMFSSLSQTSSDVNMVQSLVPIWEEQRKRSGIHEATMLSDSGKPLPEDVVKLLSSGLDFEKKLIQLCSEAETTLSCTPLEKELRETDIIGSASPPASLCDNAKLLEERTDTSLKLLSQMQSAEKIEMLDIKDADMEAQNLLKWLATSQAAEDINSDDELACETILSPLPPAATIDKMLEKANMAYESESQQECQDILDSIDDMLELDLPKKKPCRSFDHNCPIEASSDSMIPQVDGSNDDEFSSPCSSLAGTSSAVEINNEYKRASEYHLLRNTDTSTVSTDKRNRQWGSLPFSMTGKVNNDGEHATSQAAHLFERETKDSALSDLTRNEVKNNTCIKRNVDEGASYSKEVHSLVNCSLRDLMRRKRSYRVEHDERESGTAKKLNLDRHGGTKTCLWPKLELETMQTDEIETELQKNSDHEVRSRDNLVCGKQSLPSGSDSFLNMSKDECLGQHERECLEASMVLKNSTTQSSSSMHEGPVLLETSHFIDSMDKSVACREKNTKDGTTYEKHVASDAYTPNPSLDTQLRTDDDHKVRAPERCQQTDSAASGRQNSFVDDKVLGKSKCVDKTSCGSICFVQHDQMKSYEHAVGKSAASDTRVLLSEKVDNQKLDKNLLCETVGSEAIVDDLKSNHIKLTEVTIGNSSSFDKNLESNLSLPTFSDTHSHMDEDDDMPGNALDVLFPISARNSQKQMESWNKCVTLKTPGSSGTNGVSTYYQNDGSHLYMLTPNILPPSVSSVQRWLFCDEREDQDGPKCTSGPPLRHNTPDQMRQEPGAENKDVSKCASGPPLRPELYQDAGPEKKLPCISEGQTEGTKACMDHSQDISQISGPDKKSSFTPLSQIGFRDPASVGRGQQLTLLSIEVLAESRGDLLPDPQFDGVNIVALGFQNDCDATIENLVLVHSKFAPCQRSFDGLSDCKVLNFTDEKHLFKEFMKIVSSSDPDILMGWDIQGNSLGFLAERASHLGLGLLNYLSRTPSNSWINSQDTETSEKSILEPDIPDTPSLDCCAQESSVIDDEWGRTHASGVHVGGRIVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKVPSLNHKVLTKWFSSGPGQARYQCIKYVVDRAKLNFEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVPSKTNTLGVSPFLPEQRILQDLKDQILLTPNGVMFVPSKVQRGVLPRLLEEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNQHEKWNAKVIYGDTDSMFVLLKGRTVKESFQIGSEIASAITAMNPSPVTLKMEKVYYPCFLVTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCEAVAKIMEQSLRFFFEHQSLLEVKAYLQRQWKRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDRRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNKWFTEMPRPIREASVKHAFTPNFQRTRIDYYYLSKHCVLCGELVQASARLCNQCSENEVAAATAVIGKTSKLEQEMQHLVSICQHCGGGDRLLESGVKCTSISCLVFYERRKVQKELLAATHVASDKGFYPRCTVEWF* 1996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4925 1995 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1987 IPR030559 GO:0006281|GO:0016035|GO:0019985
Mal3g4925 1995 CDD POLBc_zeta 1409 1857 - -
Mal3g4925 1995 Gene3D - 1703 1867 IPR042087 -
Mal3g4925 1995 ProSitePatterns DNA polymerase family B signature. 1628 1636 IPR017964 GO:0000166|GO:0003676
Mal3g4925 1995 Gene3D Palm domain of DNA polymerase 1447 1692 IPR023211 -
Mal3g4925 1995 SUPERFAMILY Ribonuclease H-like 35 1408 IPR012337 -
Mal3g4925 1995 SUPERFAMILY DNA/RNA polymerases 1448 1861 IPR043502 -
Mal3g4925 1995 CDD DNA_polB_zeta_exo 1133 1383 - -
Mal3g4925 1995 Gene3D DNA Polymerase, chain B, domain 1 29 196 - -
Mal3g4925 1995 Pfam DNA polymerase family B 1402 1849 IPR006134 GO:0000166|GO:0003677
Mal3g4925 1995 MobiDBLite consensus disorder prediction 503 528 - -
Mal3g4925 1995 MobiDBLite consensus disorder prediction 786 807 - -
Mal3g4925 1995 PRINTS DNA-directed DNA-polymerase family B signature 1570 1582 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mal3g4925 1995 PRINTS DNA-directed DNA-polymerase family B signature 1461 1474 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mal3g4925 1995 PRINTS DNA-directed DNA-polymerase family B signature 1626 1634 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mal3g4925 1995 SMART polmehr3 1134 1640 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mal3g4925 1995 Pfam DNA polymerase family B, exonuclease domain 55 196 IPR006133 -
Mal3g4925 1995 Pfam DNA polymerase family B, exonuclease domain 1194 1276 IPR006133 -
Mal3g4925 1995 Gene3D - 1164 1444 IPR036397 GO:0003676
Mal3g4925 1995 MobiDBLite consensus disorder prediction 1028 1081 - -
Mal3g4925 1995 Pfam C4-type zinc-finger of DNA polymerase delta 1894 1967 IPR025687 -
Mal3g4925 1995 Gene3D Helix hairpin bin 1527 1587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4925 Mal-Chr3 129299302 129314821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4925 1175 1977 Core DNA Replication Machinery Family AT5G63960 28.623 3.08e-89 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4925 K02350 - gmx:100777934 3009.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4925 3 129299302 129314821 Mal3g4925 3 129299302 129314821 ECH