Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4921 ATGTATCATTCGGTAACAGATAGTGGTGGAGGTTCTTCTACTTCAGGACCTATTTTGATCCCCAAGCGTTTTGTGTGGCCTTATGGAGGAACAAGAGTTTTTCTCAGTGGTTCTTTCACTAGATGGTCGGAACATATACCGATGTCTCCAATGGAAGGATGCCCTTCCGTGTTTCAGGTTGTTTGCAGCTTGATGCCGGGATATCATCAGTTTAAATATAATGTGGATGGTCAATGGCGGCATGATGAGCACCAGCCATTTGTAAATGGGAACTATGGAGTAGTAAATACTACTTACTTAGTGAGAGAACCAGATATTTTACCTGCCATCTTAAGTGCTGAAACATCCAGTAGGTCACACATGGAGGTTGATAATGATGTCTTTGGGCATGTAGAAGCTAATCCAAGGATGTCACCTTCTGATCTGGAGGTCTCTCGCCGCCGTATATCTAAATTCTTGTCTGAACATACTGCATATGAATTGCTTCCTGAATCTGGGAAGGTCATTGCCTTGGATGTCAATTTACCAGTTAAGCAAGCATTCCATGTTCTTTATGAGCAGGATGTACCTATGGCCCCTCTATGGGATTTTTGCAAGAGTCAGTTTGTTGGAGTGCTTAGTGCAATGGACTTCATTCTCATATTGAAAGAGTTGGGGAATCATGGACCAAATTTGACTGAAGAACAACTTGAGACTCATACTATAGCTGCCTGGAAAGAGGGAAAATTAAAGCAACGCAGGGCACTTGAAAATAATGCAGGATCAAGTCCTCATTGTTTTGTTCATGCTGGGCCCAAGGAATGCCTAAAAGACGTGGCTTTGAAGGTTTTGCAAAACAAGGTGTCAACGGTTCCTATCATTTCTTCAGAGGATGGTTCATTTCCCCAACTGCTGCATCTTGCTTCCCTATCAGGAATTCTAAAATGTATATGCAGGCATTTTGAGCACTCTGCTGGTTCTTTGCCCATTCTTCAACTTCCGATTGGTTCAATACCTTTGGGTACATGGGTGCCTAACGTTGGGGATCCAAATGGACAGCCACTCACATGGCTAAGGCCAAATGCTTCTCTGGGTGATGCCCTGTCGATGTTTGTTCAAGCTAAAGTTAGCTCAATCCCAATCGTGGATGAAAATGATTCATTGCTTGACATATATTCAAGAAGTGATATTACTGCATTGGCTAAAGATAAAGCATATGCTCGGATATCCCTGGAGGAAACTAATATTCATCAGGCATTAATTTTGGGACAAGATGCGAATTCTCCTTATGGACTTTACAATGGCCACAGATGTCATATGTGTTTGAGGTCTGATTCATTGCACAAAGTGATGGAGCGGTTGGCTAAACCTGGGGTTAGGAGACTTGTGATTGTGGAGGCTGGTAGCAAGCGTGTGGAAGGGATTATTTCATTAAGTGATGTTTTCAGATTCTTATTGGGCTAG 1443 0.4262 MYHSVTDSGGGSSTSGPILIPKRFVWPYGGTRVFLSGSFTRWSEHIPMSPMEGCPSVFQVVCSLMPGYHQFKYNVDGQWRHDEHQPFVNGNYGVVNTTYLVREPDILPAILSAETSSRSHMEVDNDVFGHVEANPRMSPSDLEVSRRRISKFLSEHTAYELLPESGKVIALDVNLPVKQAFHVLYEQDVPMAPLWDFCKSQFVGVLSAMDFILILKELGNHGPNLTEEQLETHTIAAWKEGKLKQRRALENNAGSSPHCFVHAGPKECLKDVALKVLQNKVSTVPIISSEDGSFPQLLHLASLSGILKCICRHFEHSAGSLPILQLPIGSIPLGTWVPNVGDPNGQPLTWLRPNASLGDALSMFVQAKVSSIPIVDENDSLLDIYSRSDITALAKDKAYARISLEETNIHQALILGQDANSPYGLYNGHRCHMCLRSDSLHKVMERLAKPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4921 480 Pfam CBS domain 431 479 IPR000644 -
Mal3g4921 480 Pfam CBS domain 349 391 IPR000644 -
Mal3g4921 480 ProSiteProfiles CBS domain profile. 426 480 IPR000644 -
Mal3g4921 480 Pfam Glycogen recognition site of AMP-activated protein kinase 20 105 IPR032640 -
Mal3g4921 480 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 12 480 - -
Mal3g4921 480 SUPERFAMILY CBS-domain pair 346 479 IPR046342 -
Mal3g4921 480 SUPERFAMILY E set domains 20 101 IPR014756 -
Mal3g4921 480 Gene3D - 140 319 IPR046342 -
Mal3g4921 480 Gene3D - 326 480 IPR046342 -
Mal3g4921 480 SUPERFAMILY CBS-domain pair 148 316 IPR046342 -
Mal3g4921 480 CDD E_set_AMPKbeta_like_N 23 96 - -
Mal3g4921 480 SMART cbs_1 430 479 IPR000644 -
Mal3g4921 480 SMART cbs_1 167 216 IPR000644 -
Mal3g4921 480 SMART cbs_1 347 395 IPR000644 -
Mal3g4921 480 Gene3D Immunoglobulins 18 101 IPR013783 -
Mal3g4921 480 ProSiteProfiles CBS domain profile. 341 401 IPR000644 -
Mal3g4921 480 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 12 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4921 Mal-Chr3 129277299 129285264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4921 29 91 Protein tyrosine phosphatase (PTP) family AT3G52180 34.375 9.54e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4921 - - gmx:100814655 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4921 3 129277299 129285264 Mal3g4921 3 129277299 129285264 ECH
Mal3g4921 3 129277299 129285264 Mal1g1439 1 18500644 18504159 PCT