Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4905 ATGTCTCGATCATTGGTTCAACCAATTGGTCAAAAGCGATTAACAAACGTTGCAGTTGTTCGTCTCAAGAAACACGGCATGCGTTTTGAAATCGCTTGTTACCCTAACACCGTTCTTTCTTGGCGTTCTGGCGTTGAAAAGGATATTGATGAAGTGTTGCAGTCACATACTGTGTATACAAATGTTTCGAAAGGTGTTCTTGCTAAGTCTAAGGATTTGAATGCGGCGTTTGGTACTGATGATCATTCCAATATATGCTTAGAGATTTTAAAGAAAGGGGAACTTCAGGTTGCTGGCAAAGAGAGAGAGTCAATGCTTTCTAGTCAGTTCAGGGACATTGCCACCATTGTAATGCACAAGACTTTTAATCCCAAGACTAAGCGCCCTTACACTATCAGCATGATTGAACGCCTCATGAGAGATATCCATTTCGCCGTTGATCCAAACAGCACCTCCAAGAAGCAGGCACTAGAGTTGATTCAGGAGCTTCAGAAGCACTACCCTATAAAACGGTGTCCATTGAGGGTACGCGCTGCTGCCCCTGAGGAGCAAGTACCTATCCTTTTAGAAAATCTGAGTGAGTGGAAGGCAACCGTTATTTCTAAAGAAGGGACAGCTGCTCAGCTATCTGTTGTTTTTGAATTGGAACCCGGTTTGTATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCTCACTCTCTTTATGTTGACGGGGATACTCATGTGGATTACAATGATCATGAGGACATGCCTGCATCATTGCCCCAAAGAGCTCCTGAATCGGTGCTTGAGCTGAATGATAAACTTCAAAAGCAAACAATTTCATCTGGACCTAGGCCTACTGAGGGACAGCAACCAAAGCAAAACAAGTGCAACACCTGCGATGTTTCTTTTGAAGATGCTAAGTTGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGGAAAACGAGGCAACTCCCTCCACTTACTGAAGAAGAGTGCACGGCAGATATGGAATTGTTTGAATCAAAATCCGATTTGAAGGATTATTCATTTTGA 1077 0.428 MSRSLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYTNVSKGVLAKSKDLNAAFGTDDHSNICLEILKKGELQVAGKERESMLSSQFRDIATIVMHKTFNPKTKRPYTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHYPIKRCPLRVRAAAPEEQVPILLENLSEWKATVISKEGTAAQLSVVFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTHVDYNDHEDMPASLPQRAPESVLELNDKLQKQTISSGPRPTEGQQPKQNKCNTCDVSFEDAKLYREHHKSEWHKHNMKRKTRQLPPLTEEECTADMELFESKSDLKDYSF* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4905 358 Gene3D - 100 172 IPR037188 -
Mal3g4905 358 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Mal3g4905 358 PANTHER BNAANNG06530D PROTEIN 1 358 - -
Mal3g4905 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Mal3g4905 358 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Mal3g4905 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Mal3g4905 358 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Mal3g4905 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Mal3g4905 358 SUPERFAMILY beta-beta-alpha zinc fingers 294 344 IPR036236 -
Mal3g4905 358 Gene3D - 174 251 - -
Mal3g4905 358 Gene3D - 1 96 IPR036786 -
Mal3g4905 358 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 232 IPR002140 GO:0042256
Mal3g4905 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 358 IPR039100 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4905 Mal-Chr3 129087151 129091883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4905 27 358 C2H2 Transcription Factor Family AT1G43860 55.942 5.51e-135 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g4905 SBDS_C 2.4e-27 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4905 K14574 - gmx:100797497 628.246