Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4897 ATGAGTCGCCGATCAAGTCGAACAGTATATGTTGGCAATCTTCCTGGTGACATTCGTTTGAGAGAAGTAGAGGATCTTTTCTACAAGTTTGGTCCTATCGTTGACATTGAATTGAAGATTCCTCCAAGGCCACCAGGTTATGCTTTTGTGGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCATTATCGAGATGGATACAAGTTTGATGGCTTTCGATTAAGAGTTGAACTTGCACATGGTGGGCGGGGATATTCATCATCAGTAGACCGTTATAGTGGTAGTGGTGGTAGCCGTGGAGTTTCCAAGCATTCTGAGTATCGTGTTCTAGTCACTGGATTACCTCCTTCGGCTTCATGGCAAGACCTGAAAGATCACATGCGTAGAGCTGGTGATGTATGTTTCTCTCAAGTTTTCCGTGACCGGGGTGGCAATACTGGGATAGTGGAGTATACAAATTATGACGATATGAAATATGCTATTAGAAAACTTGACGACTCAGAATTCCGAAATGCGTTCTCTCGGGCATACATACGAGTGAGGGAATATGATCGACGGAGATATTCTAGGAGTCCCAGTTGTGATACAAGGAGGAGTTATTCTAGAAGCCCTAGCCACAGTCCTTACATGTCACGAAGTCGAAGCCGCAGTCAAAGTTATAGCTATAATAGCAAAGGCAGCAAAAGCTTGTCTCCAAAAATGAAACGCACTCGGCGGTCTTTATCCCGTTCAAGACATGACTTTTTGCAGCAACCTTGGGGCATGTGGTGCTCAAATTCTCACTACTTTGTGGTCTAA 801 0.4419 MSRRSSRTVYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAEDAIHYRDGYKFDGFRLRVELAHGGRGYSSSVDRYSGSGGSRGVSKHSEYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRDRGGNTGIVEYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRRYSRSPSCDTRRSYSRSPSHSPYMSRSRSRSQSYSYNSKGSKSLSPKMKRTRRSLSRSRHDFLQQPWGMWCSNSHYFVV* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4897 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mal3g4897 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 172 IPR000504 GO:0003723
Mal3g4897 266 MobiDBLite consensus disorder prediction 189 244 - -
Mal3g4897 266 CDD RRM1_SF2_plant_like 8 79 - -
Mal3g4897 266 CDD RRM2_SF2_plant_like 108 183 - -
Mal3g4897 266 Gene3D - 107 185 IPR012677 -
Mal3g4897 266 MobiDBLite consensus disorder prediction 195 231 - -
Mal3g4897 266 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 247 - -
Mal3g4897 266 Gene3D - 2 106 IPR012677 -
Mal3g4897 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Mal3g4897 266 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Mal3g4897 266 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mal3g4897 266 SMART rrm1_1 109 178 IPR000504 GO:0003723
Mal3g4897 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mal3g4897 266 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4897 Mal-Chr3 129038656 129041817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4897 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 9.23e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4897 K12890 - gmx:100794282 325.094