Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4893 ATGGCGGATGTGATGGCAATGGAAGAGATTGAACACAATGCGCCGCATCTTCAAATCGATCTATCTACTGTTGATCTCAACTCCATTCATCTCCCACCAGGTGAAGATTGTGGCATCCTCAGTGACGACGAGGATGTTTATCAAGAGGAGAATCTGGAGTTTGATTCTGGCTTTGGCAACATTATAGTAGTGAATAATCTCCCTGTTGTTCCGAAAGAGAAGTTTAAGAAGCTTGAAGACCGTCTTCGTGAACATTATAGTCAGATCGGTGTTATCAAAGATGATGCCCTCTGGATGCCTGTTGATCCTGTGACCGAAAAGTCCTTAGGTTACTGCTTCATTGAGTACAATACTCCTCAGGAAGCCGAGCTTGCTAAAGAAAAGACTCATGGATACAAATTGGATCGTTCACACACATTTTCTGTCAGTATGTTTGATGATTTTGACCGGTTTATGAAAGTGCCGGACGAGTGGGCTCCTCCTCCAAATAAGGAATATGCTCCAGGGGAAAATCTTCAACAATGGCTTACTGATACTAAGGCCCGAGACCAGTTTGTGATCCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCTAGGCATTTAAAGCCTGATCCTGTTTATAAACGTGCATTTTGGACAGAGAGTTTTGTACAATGGTCTCCTTTGGGCACATACTTGGCAACAGTTCACCGGCAGGGGGCGGCAGTCTGGGGAGGTGCTACAACCTTCAACCGTCTCATGCGTTATGCTCATCCTCAGGTAAAGCTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTACAGCTGCCATGAACCAAGCAATCCTCGAGATGCTAATAGGGTTGTGATAAAGATATTTGATGTGAGGACTGGTAAAGTGATGAGAGAGTTCAAGGGAAGTGCTGATGATTTTGCTATTGGAGGTACTGGGGGTGTCACAGGAGTGTCATGGCCTGTTTTCAAATGGAGTGGTGGAAAAGATGATAAGTACTTTGCAAGGATGGGAAAAAATGTACTTTCTGTATATGAGACAGAAACATTTTCTCTCGTTGACAAAAAATCCTTAAAGGTTGAAAATGTAATGGATTTCAGCTGGTCACCAACTGATCCAATCATTTCACTGTTTGTTCCCGAGACGGGAAGGGGTAACCAAACTGCTAGGGTAAGTCTTGTTCAAATCCCCAGCAAAAAAGAACTCAGACAAATGAACCTCTTTAGTGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGGGATTACCTTGCTGTTCATGTAGACCGATATACCAAAACTAAAAAAAGCACTTACACAGGCTTTGAGCTCTTCCGTATAAGAGAACGCGACATACCCATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTTCTTGGGAGCCAAAGGGACATAGGTTTGCTGTTATTCATGGCGATAACCCTAAGCCTGATGTCAGTATCTACTCTATGCGAACTGCTCAGAACACTGGTCGGGTTTCAAAGCTCACTACTCTGAAAGGAAAGCAGGCAAATGCTTTGTTTTGGTCACCTGCAGGTCGCTTCATTGTACTAGCAGGGTTGAAAGGCTTCAATGGACAGTTGGAATTTTACAATGTTGATGAGCTTGAAACCATGGCTACTCCTGATCATTTTATGGCAACTGATGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTGACTTCGGTTCATGAAATGGAAAATGGATTCAATATATGGTCTTTCAACGGCAAACATCTTTATCGGATATTGAAGGATCACTTTTTTCAGTTCTTATGGAGACCAAGGCCGCCATCTTTCTTGACTCCCGATAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCAGAAGATCAAGATGTTTCATTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGTATGATCTTGAATGAAGATTGGGACAAGTGGGTCAATGAATGGAAGGTGATGCATGAGGAAGAGAAGTTAGAGAGGCAACAACTGAGGGACGGCGAAGCTAGTGACGATGAAGAGGAATATGAGGCAAAGGACATTGAAATCGAGGACGTCGTTGATGTTTCCAAAGAGATCCTTCACTTTGAGTATGGTCAGGAGTGA 2160 0.4306 MADVMAMEEIEHNAPHLQIDLSTVDLNSIHLPPGEDCGILSDDEDVYQEENLEFDSGFGNIIVVNNLPVVPKEKFKKLEDRLREHYSQIGVIKDDALWMPVDPVTEKSLGYCFIEYNTPQEAELAKEKTHGYKLDRSHTFSVSMFDDFDRFMKVPDEWAPPPNKEYAPGENLQQWLTDTKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSCHEPSNPRDANRVVIKIFDVRTGKVMREFKGSADDFAIGGTGGVTGVSWPVFKWSGGKDDKYFARMGKNVLSVYETETFSLVDKKSLKVENVMDFSWSPTDPIISLFVPETGRGNQTARVSLVQIPSKKELRQMNLFSVSDCKMYWQSNGDYLAVHVDRYTKTKKSTYTGFELFRIRERDIPIEVLELENKNDKIIAFSWEPKGHRFAVIHGDNPKPDVSIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGQLEFYNVDELETMATPDHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPDKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRMILNEDWDKWVNEWKVMHEEEKLERQQLRDGEASDDEEEYEAKDIEIEDVVDVSKEILHFEYGQE* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4893 719 Pfam Eukaryotic translation initiation factor eIF2A 407 606 IPR013979 -
Mal3g4893 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal3g4893 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 135 IPR000504 GO:0003723
Mal3g4893 719 Gene3D - 183 383 IPR015943 GO:0005515
Mal3g4893 719 PIRSF Transl_init_eIF3b 6 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal3g4893 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Mal3g4893 719 PANTHER BNACNNG51870D PROTEIN 5 712 - -
Mal3g4893 719 Gene3D - 55 154 IPR012677 -
Mal3g4893 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
Mal3g4893 719 Gene3D - 384 631 IPR015943 GO:0005515
Mal3g4893 719 SUPERFAMILY DPP6 N-terminal domain-like 218 602 - -
Mal3g4893 719 SUPERFAMILY RNA-binding domain, RBD 56 148 IPR035979 GO:0003676
Mal3g4893 719 MobiDBLite consensus disorder prediction 676 696 - -
Mal3g4893 719 CDD RRM_eIF3B 59 142 IPR034363 -
Mal3g4893 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4893 Mal-Chr3 128960764 128964472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4893 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 75.352 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4893 K03253 - gmx:100817394 1314.67