Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4864 ATGGTAAAGGGAGGAAAGGTTAGTAGCAAAAGAAATTTTAGGAAGAGGGTTAGGTCAAAGGGGAGTGGTTCTGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCCGGGAATGTATCTGATTGTCCAGAGGATGATTGTTTCTCTTTGGATGGATTTATAGAAGATGGGGATTCGGAAGAGGAGGAGGTTCAACGAGTGACGAAATTCAACAGATCGAGGGCTAAAACTGGCGTAAGGCGTCAGAGGAAAAATGCAACTAAAACCTCGCATAAGAGACAAAGAGTTGCATATGAAGAACAAATAGAAGAAGAAGAAGAAGATGAAGAGAAAGAAGAAGAGGAAGAAGAAGAAGAAGAAATAGAAGAAGAGGAAGAAGATGATGAGGATTACATTAATGTTGATGAAGAAGAGGAGGAGGAGGAGGAAGGGGAAGAAGAAGAAAAAGAAAAAGAAGTGGAAGAGGTAGGTGGAAATGATGAGGATGAGGATTTCAATTATGATGATGACGAATTTATACCGGAGGAAGAAGATTACACAGATGAAGAGGAAGAAGAAGCAAAGGGCAGAAAGAAGAAAAAGGAGGATTTCATTCATGAAGATGAAGAATTTATACCGGAGGAAGAAGATTACACAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAACAAAGAGTAGAAAGAAGAAAAAGGAGGATTTCATTTATGAAGATGAAGAATTTATACCGGAGGAAGAAGATTACACGGATGAGGAGGAAGAAGAAAGAAGGGGCGTTAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCTACTTCTAGCAGAGGTCGCAAAAGGAGTGGTCCTAGAGTTTCAAAGAAGGCCAAGAGAAAGAGAAGACGAAAGAATGGAGGATCAAGGAGGAAAGTACAGTGTGATGATGCAGATGATTTTTTGGATAATGTCCCAGCCATTACAACAAATAGCAGAAAGAGATCAGTCCTGAAAAGGCGAAGGGTTATCCTTGAAGATGCCAATTCCGGTTCAGATTGTGAGTCTAGACCATCTGATTATGAATTTACTATATCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCCGTGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGGAAAATGAAGTGTTTGGAGTACATGAAGATCTACATCAGCAACGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTAGAGGACTTCAAGAGTGAGGTGGGAAAACAGGTGTGTGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAACAGCTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCCAAACAATCAGTAAGCCTGCACTATCAACAGCAGTGGAAGAAACGGTGATACAAGTGCCTGAACGTGATCAGGTTTATCAGCCCACTGAAGAAGAACTCAGGAGCTACATTGATCCATATGAGTCCGTTATTTGTTCAGAGTGTCATCTAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATCTGTGATTCCCCTGCACACACTTACTGTGTTGGTTTGGGGAGAGAAGTACCTGAAGGTAATTGGTACTGTGATTGTTGTAGACCAGTTGCTTTGGCATCTTTAAATTCCCAAGCTCAAGAATCTGATTTAAGAGCGACAACTCAAAGCCTGCCTTCCAGACCATCACCTGTTCATATACGAGAAAGTATAGACCTGAACTTGATGTCTTCACCTCATACATCTTTTAGTCAAGGGTTCGGGCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTACCGAAGGAGCTTCTCTGATGTCTGGAGGTGGGGCACCAACTTTGTCAGATAGACGCTGGATACACCGTCAAGTTCAGCTACAAATTCAGCAGCTACGTTCAATAGATAGAATGACTTCTACAACGGGCAGAACTAATGGTGTTTCAGCTACCAGTACAATAAGTAGCGTGCATAGCTCTGAAATTAATAGGGAACCAAGTTCTCAACATACAAGAACACAGGACATAGGAACATCCTATCACACATTTTTGGAGGAGAGATTAGGCAACAATATCTCTCCATTAATGCAGAATTCAACCATGAGAATGAGCAATTCAAGGAGGCCAGTGGTTCAGGATTCAAGGAGGCCAATGGTTCAGGATTCAACGATGATTTTGAACGGGCCTGTGAATACGGCTATATGGCCTGGAATTTTGGGGACATCCACCTTATCAGATTATGGACCAATCCACCCGTGCAGCAGCAGATCAAACATTGTCACTGAGGGTAGTATGCCCGCTACTGTCAAAGAAGAAGATAACTTGCACATTGTAAAGGAGCAGTTGCAGTCAATGGTTAAAAGTCATCTGAGGAGATTGTCTCAAGATACTGATTTGGGTTATAGTACTTTCAAGGACATTGCAAGGAGTTCTACGCATACAATACTCGCTGCTTGTGGACTCGAGCACAAGACGAGTGAAGTTTGTACTGTGCCTCCTCCACCAACCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAACGAGTATGATTGAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTCGTAGGAGATGTGGTTAAAAGTATTTTGGACACAAGAATGTCTTCACAGTGGTTACGATTAGGACTTTAG 2793 0.4225 MVKGGKVSSKRNFRKRVRSKGSGSDDSDEDYVVSDDAGNVSDCPEDDCFSLDGFIEDGDSEEEEVQRVTKFNRSRAKTGVRRQRKNATKTSHKRQRVAYEEQIEEEEEDEEKEEEEEEEEEIEEEEEDDEDYINVDEEEEEEEEGEEEEKEKEVEEVGGNDEDEDFNYDDDEFIPEEEDYTDEEEEEAKGRKKKKEDFIHEDEEFIPEEEDYTDEEEEEEEEEEEEETKSRKKKKEDFIYEDEEFIPEEEDYTDEEEEERRGVKKKNNGMKMGKKKALKKRVSATSSRGRKRSGPRVSKKAKRKRRRKNGGSRRKVQCDDADDFLDNVPAITTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTISEEEKEQVREAVELCGNIRRNLRRASLRMENEVFGVHEDLHQQRKPPARKGKEKIEESQGRKGKEKVEDFKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLCKQRFQTISKPALSTAVEETVIQVPERDQVYQPTEEELRSYIDPYESVICSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDCCRPVALASLNSQAQESDLRATTQSLPSRPSPVHIRESIDLNLMSSPHTSFSQGFGHLSSSRFSGRSTEGASLMSGGGAPTLSDRRWIHRQVQLQIQQLRSIDRMTSTTGRTNGVSATSTISSVHSSEINREPSSQHTRTQDIGTSYHTFLEERLGNNISPLMQNSTMRMSNSRRPVVQDSRRPMVQDSTMILNGPVNTAIWPGILGTSTLSDYGPIHPCSSRSNIVTEGSMPATVKEEDNLHIVKEQLQSMVKSHLRRLSQDTDLGYSTFKDIARSSTHTILAACGLEHKTSEVCTVPPPPTVCPHIELIAGGQTSMIEGCCSSCFDSFVGDVVKSILDTRMSSQWLRLGL* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4864 930 MobiDBLite consensus disorder prediction 185 201 - -
Mal3g4864 930 SMART ring_2 447 488 IPR001841 -
Mal3g4864 930 MobiDBLite consensus disorder prediction 242 256 - -
Mal3g4864 930 MobiDBLite consensus disorder prediction 102 184 - -
Mal3g4864 930 CDD RING-HC_Topors 447 489 - -
Mal3g4864 930 Pfam PHD-finger 536 582 IPR019787 -
Mal3g4864 930 Coils Coil 89 157 - -
Mal3g4864 930 SMART PHD_3 536 581 IPR001965 -
Mal3g4864 930 Pfam Ring finger domain 446 489 IPR001841 -
Mal3g4864 930 SUPERFAMILY FYVE/PHD zinc finger 508 582 IPR011011 -
Mal3g4864 930 MobiDBLite consensus disorder prediction 226 241 - -
Mal3g4864 930 PANTHER F18C1.6 PROTEIN 126 919 - -
Mal3g4864 930 PANTHER F18C1.6 PROTEIN 1 126 - -
Mal3g4864 930 SUPERFAMILY RING/U-box 446 495 - -
Mal3g4864 930 MobiDBLite consensus disorder prediction 74 92 - -
Mal3g4864 930 MobiDBLite consensus disorder prediction 685 719 - -
Mal3g4864 930 ProSitePatterns Zinc finger RING-type signature. 466 475 IPR017907 -
Mal3g4864 930 MobiDBLite consensus disorder prediction 202 225 - -
Mal3g4864 930 Coils Coil 209 237 - -
Mal3g4864 930 ProSiteProfiles Zinc finger PHD-type profile. 534 583 IPR019787 -
Mal3g4864 930 MobiDBLite consensus disorder prediction 1 319 - -
Mal3g4864 930 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 524 605 IPR013083 -
Mal3g4864 930 PANTHER F18C1.6 PROTEIN 126 919 - -
Mal3g4864 930 PANTHER F18C1.6 PROTEIN 1 126 - -
Mal3g4864 930 ProSiteProfiles Zinc finger RING-type profile. 447 489 IPR001841 -
Mal3g4864 930 MobiDBLite consensus disorder prediction 267 312 - -
Mal3g4864 930 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 506 IPR013083 -
Mal3g4864 930 MobiDBLite consensus disorder prediction 407 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4864 Mal-Chr3 128699690 128702773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4864 438 492 C3H Transcription Factor Family AT2G39100 43.636 9.19e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal3g4864 PHD 3.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4864 - - mtr:MTR_7g112410 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4864 3 128699690 128702773 Mal3g4864 3 128699690 128702773 ECH