Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4860 ATGGGAATCATGGATCAAATGGAGAAGGAATGTTGTTCATACGATGAAATGGGTGTGATCAAGAAATGTTGTGCTGATTGCAAAACCACCAAAACCCCACTTTGGAGAGGAGGACCAAATGGACCAAAGACGTTGTGCAACGCTTGTGGAATTCGGTATAGGAAGAGAAGGGGTTGTTGTAGCAAAGGACAAGAAAGGGAAAGGAAGAGAGAGAAAGCAGCACAAAATGGGAGGGGTGGTCGTACTACTAGTGATGATGATGATTGGAGTGAGTGTTTGAAAATGAAATTAGTGGCGTTGGGTGAAGAGTTTTTGTTACAGAAGAAACAAAGAAGGATTAAATTAGGTGAAGAGGAACAAGCTGCTGTGTGTTTGATGGCACTCTCTTGTGGTTTTGTTTTTGCTTGA 408 0.4216 MGIMDQMEKECCSYDEMGVIKKCCADCKTTKTPLWRGGPNGPKTLCNACGIRYRKRRGCCSKGQERERKREKAAQNGRGGRTTSDDDDWSECLKMKLVALGEEFLLQKKQRRIKLGEEEQAAVCLMALSCGFVFA* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4860 135 PANTHER OS01G0976800 PROTEIN 5 135 - -
Mal3g4860 135 Gene3D - 20 85 IPR013088 GO:0006355|GO:0008270
Mal3g4860 135 CDD ZnF_GATA 24 72 IPR000679 GO:0006355|GO:0043565
Mal3g4860 135 ProSitePatterns GATA-type zinc finger domain. 24 49 IPR000679 GO:0006355|GO:0043565
Mal3g4860 135 Pfam GATA zinc finger 24 57 IPR000679 GO:0006355|GO:0043565
Mal3g4860 135 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 58 - -
Mal3g4860 135 MobiDBLite consensus disorder prediction 62 87 - -
Mal3g4860 135 PANTHER GATA TRANSCRIPTION FACTOR 16 5 135 - -
Mal3g4860 135 SMART GATA_3 18 69 IPR000679 GO:0006355|GO:0043565
Mal3g4860 135 ProSiteProfiles GATA-type zinc finger domain profile. 24 54 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4860 Mal-Chr3 128670650 128671468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4860 5 135 C2C2-Gata Transcription Factor Family AT5G49300 48.855 1.73e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal3g4860 GATA 8.1e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4884 5 122091860 122092484 Mal3g4860 3 128670650 128671468 ECH
Mal3g4860 3 128670650 128671468 Mal3g4860 3 128670650 128671468 ECH