Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4859 ATGTCGTATCGTCCTAACGCAAACGCGAGAACCGAGGTTCGTCGGAATCGCTACAAGGTGGCGGTTGATGCGGAAGAAGGTCGGAGACGGAGAGAGGATAACTTGGTTGAGATCCGGAAGAATCGCAGGGAAGAAAGCTTGCAGAAGAAGAGGCGTGAGGGACTTCAACCTCAGCAGATGCCTGCATCAGTTCAATCTAATCTACTTGAGAAAAAGTTGGAGCACCTACCAGCCTTGGTTACAGGAATTTGGACCGATGATAATAACATGCAATTTGAGGCAACAACTCAGTTTCGGAAGTTGCTTTCAATAGAACGTAGTCCACCAATTGAGGAGGTTATACAAGCTGGTGTAGTTCCGCGCTTTATTGAGTTCTTGATGAGGGAAGATTTTCCACAGCTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCGGAAAATACTAAGGTAGTAATTGAGGCAGGTGCTGTCCCAATTTTTGTGAAGCTCCTTGCTTCTCCTAGTGATGATGTCCGTGAACAGGCCGTGTGGGCATTGGGAAATGTTGCTGGAGATTCGCCTAAATGCCGTGATCTTGTTCTCGGTCATGGAGCTTTGCTTCCTCTGCTGGCTCAATTGAATGAGCATGCCAAACTTTCTATGCTCAGAAACGCTACTTGGACACTCTCAAACTTCTGCAGGGGGAAGCCACAACCTGCTTTTGAACAGGTTAAACCTGCACTTCCTGCACTTGCAAGTCTCATCCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTGCAAATGACAAAATTCAAGGCGTAATTGATGCTGGTGTCTGTCGCCGGCTTGTTGAGCTTCTACTCCACCCATCACCTTCTGTGCTTATTCCTGCTCTTCGTACCGTTGGAAATATTGTAACTGGAGATGACATGCAGACACAGGTTATCATCAACCATCAAGTTCTTCCTTGTCTTATGAGTCTCTTGACTAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGCTGGACAATATCGAACATCACAGCTGGGAATAAGCAACAGATTCAGGATGTGATGGATGCCAATATAATTGGTCCTTTGGTCCACTTGCTTCAAAATGCGGAGTTTGATATCAAGAAGGAAGCTGCCTGGGCCATCTCAAATGCTACATCGGGTGGATCTCATGAACAACTCAAGTACCTGGTCAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATCGTGACAGTTTGTCTTGAAGGACTTGAAAACATCTTAAAGGTAGGGGAAGCTGATAAAAATGTCAGCAACACTGATGGTGTGAATCTGTATGCTCAAATGATTGATGATGCCGAAGGTTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACTGAGATTTATGAAAAGGCCGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGATGACGAGGCTATGCCTCCAGGGGATGCATCTCAATCAGGGTTCAACTTTGGTGGCTCTGAAGTTCCCGCTGTGCCTTCTGGTGGATTCAACTTTAACTAG 1599 0.4515 MSYRPNANARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNRREESLQKKRREGLQPQQMPASVQSNLLEKKLEHLPALVTGIWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFIEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIEAGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPKCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFEQVKPALPALASLIHSNDEEVLTDACWALSYLSDGANDKIQGVIDAGVCRRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQVLPCLMSLLTNNYKKSIKKEACWTISNITAGNKQQIQDVMDANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQLKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNVSNTDGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDEAMPPGDASQSGFNFGGSEVPAVPSGGFNFN* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4859 532 SUPERFAMILY ARM repeat 15 501 IPR016024 -
Mal3g4859 532 Gene3D - 13 52 IPR036975 GO:0006606
Mal3g4859 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Mal3g4859 532 Pfam Armadillo/beta-catenin-like repeat 282 314 IPR000225 GO:0005515
Mal3g4859 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Mal3g4859 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Mal3g4859 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Mal3g4859 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Mal3g4859 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Mal3g4859 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Mal3g4859 532 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Mal3g4859 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 272 IPR000225 GO:0005515
Mal3g4859 532 SMART arm_5 106 147 IPR000225 GO:0005515
Mal3g4859 532 SMART arm_5 275 315 IPR000225 GO:0005515
Mal3g4859 532 SMART arm_5 149 189 IPR000225 GO:0005515
Mal3g4859 532 SMART arm_5 191 232 IPR000225 GO:0005515
Mal3g4859 532 SMART arm_5 234 273 IPR000225 GO:0005515
Mal3g4859 532 SMART arm_5 317 358 IPR000225 GO:0005515
Mal3g4859 532 SMART arm_5 360 400 IPR000225 GO:0005515
Mal3g4859 532 SMART arm_5 403 443 IPR000225 GO:0005515
Mal3g4859 532 Gene3D - 74 497 IPR011989 -
Mal3g4859 532 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Mal3g4859 532 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Mal3g4859 532 MobiDBLite consensus disorder prediction 41 61 - -
Mal3g4859 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Mal3g4859 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Mal3g4859 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Mal3g4859 532 Pfam Atypical Arm repeat 458 502 IPR032413 -
Mal3g4859 532 PANTHER IMPORTIN ALPHA 2 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4859 Mal-Chr3 128664032 128668440 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4859 132 392 U-box Gene Family AT3G46510 24.138 1.48e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4859 K15042 - gmx:100789135 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4859 3 128664032 128668440 Mal1g1493 1 19346576 19351137 PCT