Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4802 ATGCCTATGCATGAGTTATACGACATGTCTAAAGAAAAAGTTAATCATAAAGAGATGAACAATTCTTGTGCACCAGATCAATCTTCTGTACCCAGAAATGATTTACTTGAACTGGTTTGGCAAAGTGGCCAGGTTTCAATGCAGGGTCAATCTAGTAATTCCAATAGAGCTAAAAAGAGTTTAAACATTCTTAAGGGTTCAGGACAACATGATAATGAAACAAATACAAGAATGAAAAAGTTTGAGGATTTAGATAATGGTTTGAATGAAATTATTTCAAGGCCTGTTTCTTCAAGTCAAGATGAAGATTTGATGACGATGATGCCTTGGTTGAGTTGTGTAATGGATGAACACTCTTTACATCATAGTTCTGGTTTCTTACATGAATTATCAGGTGCCACTACAAATGACTTTGCTGCCTCAAATAAATTTTCTTTGCTTGATAGGAAAAGTAATTGTATTCAAGTATTTAGTGACTCTCATAAACAAGGGATCCTTTCCAAAGGTTATAATTCAGTTGCAGCGGAAGATTTTGATACCTCTGGACTAAAAACTAGCACCAATCAGTTATACACGCCATCACCGGCATTGCATCAATGTCAACCATCACTTGAAAATAATACAAAAAGTAATGCAAACCATCATGTACCTTGTGAAGAAATCTCTCATATTCCATCCTCCTCAACCATAATGAATTTCACCCATTTTGCAAAGCCTGTTGCTATTGTGAAAGCTAATCTTCAGAACATTGGTTTGTCCACTTCAAGATCAGAAAGTGTGGGAATAAAGAACAAACATGAAGCTGCAATAGCAAACAATCCTCTTGAATCAACAAAAGTTGATTTAATTGGAGAATGTCCAAAAAAATCAACCATACACTGTCGTCAGACCGTGGGACCATCAAGGGTTGATTTGAAACATTCGGAGCGAAAATCTCTCGAGCAGGATGCGGCTGTTTCTACGCCTGCTTGCAAAGATGTGTCCAAGGTTGATCAAATTTCCAATCAGGTTCTTTGTGAGCGTGGCAAAAAAAGTCAAGAAGCTGTTGAAAAATGTATGGAGCAAACAATAGTCTCTTCCTCTGTTTGCTCTGACAATGGCGCGTATAGAGGTTCAGATGATGCAAATCAAAATTTGAAGCGAAAAAATCTAGACTCTGAGGATTCTGAGTTGCACAGTGAAGATTTTGAGGATGAATCAGTTGGTGTTAAAAGGACAGCTCATGGACGAGGCTTTATGGGCTCGAAAAGAAATCGTTCAGCCGAAGTGCACAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGAACTCATACCGAATTGCAATAAGGCGGATAAAGCTTCAATGCTGGATGAAGCAATTGAGTATCTTAAAACACTTCAACTCCAACTGCAAATTATGTCAATGGGAGGTTGTGGTTTATACATGCCTATGATGTTACCTGCAGGCATGCAGCACATGCATGCGGCTCACATGCCTCCCTTTTCACCCATGAGTGTTGCCATGCAAATGGGGTTGGGGGCGCCTCAATTTCAAGGAACTAACCTTCCTGTTGCACATACATCTGGACTTGCTGCTTTACATGGGATGGCAAGACCAAATCCTCAAATGTTTGGACTTCAAGCTGATCAGGGACTCCACATGCCGATGCCATGTGCTCCGATGTTTTCTTATCCCGGAGAGCCTGTTATGAACTCATCAGCAGTAGAATTAAATGCTGGTGGAACTGCAGGACTTATGGAAACCGTAGAATCGGCTTCAGCCTCTAAGTTAAAGGATCCAATGCCAAATGGGAACTCACAAGTTATGCTTAACAACAAGGGATGTAGCTCAAAAAATCAAATGTCTATTCAGTGTGAAGCAACAACCGGTGGACTTCAGCAATCAAATTTGGTACTCCATAGTGGCCATGCCTCGTCGGCAAATGACAAAAGAGATAACATTGCGATTGATAAATCTCATTATAAGTATCACTAG 2001 0.3998 MPMHELYDMSKEKVNHKEMNNSCAPDQSSVPRNDLLELVWQSGQVSMQGQSSNSNRAKKSLNILKGSGQHDNETNTRMKKFEDLDNGLNEIISRPVSSSQDEDLMTMMPWLSCVMDEHSLHHSSGFLHELSGATTNDFAASNKFSLLDRKSNCIQVFSDSHKQGILSKGYNSVAAEDFDTSGLKTSTNQLYTPSPALHQCQPSLENNTKSNANHHVPCEEISHIPSSSTIMNFTHFAKPVAIVKANLQNIGLSTSRSESVGIKNKHEAAIANNPLESTKVDLIGECPKKSTIHCRQTVGPSRVDLKHSERKSLEQDAAVSTPACKDVSKVDQISNQVLCERGKKSQEAVEKCMEQTIVSSSVCSDNGAYRGSDDANQNLKRKNLDSEDSELHSEDFEDESVGVKRTAHGRGFMGSKRNRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQLQLQIMSMGGCGLYMPMMLPAGMQHMHAAHMPPFSPMSVAMQMGLGAPQFQGTNLPVAHTSGLAALHGMARPNPQMFGLQADQGLHMPMPCAPMFSYPGEPVMNSSAVELNAGGTAGLMETVESASASKLKDPMPNGNSQVMLNNKGCSSKNQMSIQCEATTGGLQQSNLVLHSGHASSANDKRDNIAIDKSHYKYH* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4802 666 CDD bHLH_AtPIF_like 419 479 - -
Mal3g4802 666 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 416 487 IPR036638 GO:0046983
Mal3g4802 666 Pfam Helix-loop-helix DNA-binding domain 423 469 IPR011598 GO:0046983
Mal3g4802 666 PANTHER TRANSCRIPTION FACTOR PIF3 1 624 - -
Mal3g4802 666 MobiDBLite consensus disorder prediction 647 666 - -
Mal3g4802 666 MobiDBLite consensus disorder prediction 644 666 - -
Mal3g4802 666 Gene3D - 414 476 IPR036638 GO:0046983
Mal3g4802 666 SMART finulus 425 474 IPR011598 GO:0046983
Mal3g4802 666 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 419 468 IPR011598 GO:0046983
Mal3g4802 666 PANTHER TRANSCRIPTION FACTOR PIF3 1 624 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4802 Mal-Chr3 128027476 128036558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4802 1 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 33.800 1.67e-53 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal3g4802 HLH 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4802 K12126 - gmx:100794974 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4802 3 128027476 128036558 Mal3g4802 3 128027476 128036558 ECH