Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4786 ATGGCTTCCATCACAGTTATCGGCGCTTCCACCGCATGCAAACTTCCCTCTCTCGAACTCTACAAAAAACACAAACTAACTTCCATTTCCACTTCTTCCGTTAAATTCCACTTTTCCGATGGTAACAAATCCCGCCACATCAACCGTCTCGCCAATTTCAACTCCTCCGATAGGTTTCTTCCTTCTGCCGTCGCTACTCCTAATTCTTCCTCTTCTTCACTTCTCAGCGATGAAGCATTCAAAGGCTTAGGCTCTGGTTTCGAAGGAGAATCTGAAGACGAAGATTTTCCCTCACGAACTGCTTCTATTGACGCAGATGAACTCGACATTTCTAAACTCGATTTGCCTTCGCAGCTTGTTGATTCGCTACGTGACCGTGGGATTACACAGCTTTTTCCTATTCAGAGAGCGGTGTTAGGACCTGCACTACAAGGTAGAGATATTATTGGTCGTGCAAAGACTGGAACAGGGAAAACTTTGGCTTTTGGAATTCCTATTATTAATGGCCTTGATGATGGTCAAGATTCAGGTCCTTACAGTCACAGGCGTCTTCCTAGAGCTTTGGTACTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAAGAGATAAAAGAATCTGCACCTTATCTCAAAACGGTTTGTGTATATGGAGGTGTTTCTTATGTTACTCAACAGAGTGCACTTTCGCGTGGTGTTGATGTGGTGGTTGGAACACCCGGTAGGCTGATTGACCTCATCAATGGGAACACACTTAAGTTGAGTGAAGTTGAGTATTTGGTACTCGACGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTCATTTTAGAAAAGCTTCCAGCAAAGAGACAGAGCATGCTTTTTTCTGCAACCATGCCTAGTTGGGTTAAGAAATTGGCCAGGAAATATTTGGACAATCCGTTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTATATGCTATATCGGCCACTTCCACTTCAAAGCGAACCATTCTTTCTGATCTAATTACCGTTTATGCAAAGGGTGGGAAGACTATAGTGTTTACGCAGACAAAAAAAGATGCTGATGAAGTATCAATGGCATTAACAAATAGTATCACTTCTGCAGCACTGCATGGCGATATATCTCAGCCCCAGAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAATTTACAGTGCTTGTTGCAACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCCGAGACTTTTGTACATCGCTCTGGCCGTACCGGCCGTGCAGGAAAGCTAGGTACTGCCATTCTGATGTTCACAGGTGGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGTAAATTTGAATTTGTTAACGCACCGTCTGTGGAAGATGTTTTGGAGTCATCTGCTGAGCAAGTTGTTGTCACACTCAATGGAGTTCATCCAGAATCTATTGCATTTTTCACCCCATCTGCACAGAAACTGATTGAAGAAAAAGGAACAACTGCCCTTGCAGCTGCACTGGCACAGCTGAGTGGATTTTCCCAACGTCCGTCTTCCCGGTCTCTTATCACCCATGAACAGGGATGGGTTACATTGCAATTAACTCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGCACGATCAGTCACCGGGTTTCTTGCTGATGTATATTCCAAAGCGGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTACTTGATAAGGACATACCAGCTGGAAACACTATTTCCAAAGTCACCAAGTTACCTCCTCTGCAAGATGATGGGCCTCCAAGCGATTTCTATGGGAAGTTTTCCGATAGAGAACGAAGTAACAGAAGAGGAGATTCTAGGGATGGGAGAGGTTTTAGATCCTCACGGGGATGGGATGGAGGTCGAGGCTCTGATGATGATTTTGGTGACTCATCTAGGAGGGGTGGCAGAAGTTATAAAAGTGGCAACAGCTGGTCCAAACCAGAAAGAAGCAGCCGGGATGATTGGCTAATTGGAGGCAGACAATCAAGCAGGTCTTCGTCATCACCAAACAGAAGCTTTTCAGGAGCCTGTTTTAATTGTGGGGAATCTGGGCATCGAGCGTCGGAGTGTCCAATGATGTGA 2247 0.4424 MASITVIGASTACKLPSLELYKKHKLTSISTSSVKFHFSDGNKSRHINRLANFNSSDRFLPSAVATPNSSSSSLLSDEAFKGLGSGFEGESEDEDFPSRTASIDADELDISKLDLPSQLVDSLRDRGITQLFPIQRAVLGPALQGRDIIGRAKTGTGKTLAFGIPIINGLDDGQDSGPYSHRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKKDADEVSMALTNSITSAALHGDISQPQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGGQRRTVRSLERDVGCKFEFVNAPSVEDVLESSAEQVVVTLNGVHPESIAFFTPSAQKLIEEKGTTALAAALAQLSGFSQRPSSRSLITHEQGWVTLQLTRDSENSQRYFSARSVTGFLADVYSKAADEVGKIHLIADERVQGAVFDLPEDIAKELLDKDIPAGNTISKVTKLPPLQDDGPPSDFYGKFSDRERSNRRGDSRDGRGFRSSRGWDGGRGSDDDFGDSSRRGGRSYKSGNSWSKPERSSRDDWLIGGRQSSRSSSSPNRSFSGACFNCGESGHRASECPMM* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4786 748 Pfam DEAD/DEAH box helicase 132 304 IPR011545 GO:0003676|GO:0005524
Mal3g4786 748 Pfam GUCT (NUC152) domain 536 636 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mal3g4786 748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 315 IPR014001 -
Mal3g4786 748 MobiDBLite consensus disorder prediction 711 732 - -
Mal3g4786 748 CDD GUCT_Hera 543 623 - -
Mal3g4786 748 MobiDBLite consensus disorder prediction 625 748 - -
Mal3g4786 748 Pfam Helicase conserved C-terminal domain 341 449 IPR001650 -
Mal3g4786 748 CDD SF2_C_DEAD 329 458 - -
Mal3g4786 748 CDD DEADc 119 316 - -
Mal3g4786 748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 504 IPR001650 -
Mal3g4786 748 Gene3D - 109 319 IPR027417 -
Mal3g4786 748 ProSiteProfiles Zinc finger CCHC-type profile. 732 746 IPR001878 GO:0003676|GO:0008270
Mal3g4786 748 Pfam Zinc knuckle 731 746 IPR001878 GO:0003676|GO:0008270
Mal3g4786 748 SMART c2hcfinal6 731 747 IPR001878 GO:0003676|GO:0008270
Mal3g4786 748 Gene3D - 330 532 IPR027417 -
Mal3g4786 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 470 IPR027417 -
Mal3g4786 748 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 57 743 - -
Mal3g4786 748 SUPERFAMILY Retrovirus zinc finger-like domains 712 746 IPR036875 GO:0003676|GO:0008270
Mal3g4786 748 MobiDBLite consensus disorder prediction 644 688 - -
Mal3g4786 748 Gene3D - 721 748 - -
Mal3g4786 748 PANTHER - 57 743 - -
Mal3g4786 748 SMART helicmild6 369 449 IPR001650 -
Mal3g4786 748 SMART ultradead3 127 332 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4786 Mal-Chr3 127856788 127862188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4786 89 471 Eukaryotic Initiation Factors Gene Family AT1G72730 35.401 3.78e-62 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4786 - - gmx:100789516 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1572 1 20561753 20566171 Mal3g4786 3 127856788 127862188 ECH
Mal3g4786 3 127856788 127862188 Mal3g4786 3 127856788 127862188 ECH
Mal3g4786 3 127856788 127862188 Mal1g1572 1 20561753 20566171 PCT