Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4769 ATGTTTGATTCTAGCAACTCAGGGATGACAAAAAGCAATAACCTAGTTTCCTCTCACATTCATTCTGAATCCTCCCAAAGCAAGAATAGTACTCACATGTTGACATATTTAACACCACTCAAAAAACCAAGACTGGAAATTTCAAGCCAAAAAGAAACATCAAACTCACATAAACAATACTTGGTGGGGTGTGAATATCAAAAAACAGGAAAAGTGAACTTCTCAAACTTTTCTATACCTGCAGTGTTTCTCAAACCAACTCATCAACAAAACAGTTCAAGAAATGTATTATCTTCACAAAGAGTGCAAGAGAAAGTATCAAAAGCAGTTGCTGCTACAAAATTTCAACAACAAAAGCACTTAACTTTAAATGCTGTTAACAAACCAAATTCTGCATATGAAACAAGTAGAGAACTACTACCAACCGTTGATGAACATTCTGAAGCTCCTGCTAGCCATAATAGTGCACCTGAAATTAGAGAAAAGAGAAAAGCTAGTGTTGCTAACTTATGTAATGAACGAGAATCTTCTTCTGTATGCTCACTTGAAGCCTCAAATGATATAAACTTTGGTTTCAGAAAATTACATGAGGACACTGATGACTCTCCATATTTAAGTGATAATGATGAAGAAACACCAGAAAATATGGTGAAAGAAAAGCCAGCTCGTGAAGGAAACAACAGAGTCAAAAGAAGCTACAGAAATGCGAAAGTTCATAATTTATCTGAAAGGAAGAGAAGAGATAAAATTAATGAGAAAATACGCACATTGAAAGAGCTCATACCAAATTGCAATAAGATGGACAAAGCTTCAATGCTTGACGATGCAATCGATTATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGCTAGAGCATTTTGTATGCCACTTAATCATTTTATGATGTTACCCCCACATCATATGAATATGAATCCACAACATTTAATGGGTTTCAGGCCACAAATTCAGTTTCCTATTCCACAAATGAGTAATGGTGTCACAGACAATAACAACAGAGTTCAGATGTTTGGTTTCTCCAACCAATTAGCAGTACCACCACCTATGTCAATTCCAAATGCACCTTTCATTCCTCCTATTGTTGGAAACTCTTCCACGACACCAACACCAACCTCTTTTGGCAACCAGAATCAACCTGGCAAGACATGTGGCTAA 1182 0.3638 MFDSSNSGMTKSNNLVSSHIHSESSQSKNSTHMLTYLTPLKKPRLEISSQKETSNSHKQYLVGCEYQKTGKVNFSNFSIPAVFLKPTHQQNSSRNVLSSQRVQEKVSKAVAATKFQQQKHLTLNAVNKPNSAYETSRELLPTVDEHSEAPASHNSAPEIREKRKASVANLCNERESSSVCSLEASNDINFGFRKLHEDTDDSPYLSDNDEETPENMVKEKPAREGNNRVKRSYRNAKVHNLSERKRRDKINEKIRTLKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSMARAFCMPLNHFMMLPPHHMNMNPQHLMGFRPQIQFPIPQMSNGVTDNNNRVQMFGFSNQLAVPPPMSIPNAPFIPPIVGNSSTTPTPTSFGNQNQPGKTCG* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4769 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Mal3g4769 393 SMART finulus 240 289 IPR011598 GO:0046983
Mal3g4769 393 MobiDBLite consensus disorder prediction 199 231 - -
Mal3g4769 393 Gene3D - 230 293 IPR036638 GO:0046983
Mal3g4769 393 MobiDBLite consensus disorder prediction 1 31 - -
Mal3g4769 393 PANTHER TRANSCRIPTION FACTOR PIF3 4 381 IPR044273 GO:0003700|GO:0006355
Mal3g4769 393 CDD bHLH_AtPIF_like 234 292 - -
Mal3g4769 393 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 381 - -
Mal3g4769 393 Pfam Helix-loop-helix DNA-binding domain 238 283 IPR011598 GO:0046983
Mal3g4769 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 297 IPR036638 GO:0046983
Mal3g4769 393 MobiDBLite consensus disorder prediction 371 393 - -
Mal3g4769 393 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4769 Mal-Chr3 127669908 127671599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4769 72 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.932 2.56e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal3g4769 HLH 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4769 K12126 - gmx:100804665 255.373