Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4747 ATGAAGGGAAAGATAATTATTTCCGCTGTTTCTCTTATCCTCGTTGTAGGTGTTGCCATCGGCGTTGTTGTCGTCGTTCGCAAAAATGGTGAAGACCCTGAGATTCAAACTCAACAAAAAAATCTTAGAGTTATTTGCCAAAACGCAGGAGACCAGAAACTCTGCCATGAAACTCTTAGCTCTGTGAGTGGCACCGACCCTAAGGCATACATAGCCGCCGCCGTGAAGGCAGCTACTGACAATGTCATTAAGGCTTTTAACATGAGTGACAGACTCACCACTGAGTATGGAAAGGAAAACGGTGTCAAGATGGCTCTTGATGACTGCAAGGACTTGATGCAATTTGCTTTGGACAGTCTTGAACTCTCCACCAACTGTGTTCATGAGAAAAACATTCAAGGTATTCATGACCAAACAGCTGATATGAGGAATTGGTTGAGTGCAGTTATCTCTTACAAACAAAGTTGTATGGAAGGATTTGACGATGCAATTGAAGGTGAGAAGAAGATCAAGGAACAATTCCATGTTCAAACTTTGGACAGCGTACAAAAGGTCACCGCTGTTGCCCTTGACATTGTGACTGGTTTGACCAGCATCCTCGAGCAATTCAACTTGAAGTTTGATCTCAAACCTGCTTCTCGTCGTCTTCTTGATTCTGAGGTGCATGTTGATGATGATGGATACCCTTCATGGGTCTCTGCTGTTGATCGCAAGCTTTTGGCTAAAATGCAAGGAAAGGGATGGAGAGCAAATATTAAGCCTAATGTTGTTGTTGCCAAGGATGGTAGCGGTCAATTTAAAACCATCAAAGATGCTATTGCCTCTTACCCTAGGGGAAACAAAGGCAGATATGTTATCTACGTTAAGGCTGGTGTCTATGACGAATACATCACCATCCCCAAGGATGCTGTTAACATTCTTATGTATGGTGATGGCCCTATGAGGACCATTGTCACCGGTAGAAAGAGCTTTGCTGCTGGTGTCAAGACCATGCAAACTGCCACCTTCGCCAACACCGCAACAGGGTTCCTTGGAAAGGCAATGAAATTTGAGAACACAGCTGGTCCTGCTGGTCACCAAGCCGTGGCTTTTAGAAACCAAGGAGATATGTCTGCTTTGGTGGGATGCCATATCGTGGGTTACCAAGACAGCTTGTACGTTCAAACTAACAGACAATTCTACCGTAACTGTGTTATCTCTGGTACCGTTGACTTCATCTTTGGAACATCTGCCACCTTGATCCAACACTCTACGATTATCGTGAGAAAGCCTGGAAAAGGGCAATACAACACAGTTACCGCAGACGGCTCAGAGGAGAAGAGTTTGAATACTGGTATTGTGATCCAAGGCTCCCAGATCGTCCCAGAAGCAACATTGTACCCTGAAAGATTCACAACTAGATCTTACTTGGGCAGACCATGGAAGCCATTAGCAAAGACGGTCATCATGGAATCCACCATTGGTGATTTCATTCATCCGGATGGATGGACCCTTTGGGAAGGAGCAAATAATCATAACACATGTTACTATGCAGAGTACGCCAACAATGGACCTGGTGCCAATGTTGCCAGAAGGATCAAGTGGAAGGGTTATCACGGTGTCATTAGCAGGGCTGAGGCTACCAAATTCACCGCTGGTATGTGGCTCCAGGCTGGACCCACTTCCGCACCAATATGGTTGAAAGCTCTTCGTGTTCCTCACTACCTTGGCTTTACAGCTTGA 1722 0.453 MKGKIIISAVSLILVVGVAIGVVVVVRKNGEDPEIQTQQKNLRVICQNAGDQKLCHETLSSVSGTDPKAYIAAAVKAATDNVIKAFNMSDRLTTEYGKENGVKMALDDCKDLMQFALDSLELSTNCVHEKNIQGIHDQTADMRNWLSAVISYKQSCMEGFDDAIEGEKKIKEQFHVQTLDSVQKVTAVALDIVTGLTSILEQFNLKFDLKPASRRLLDSEVHVDDDGYPSWVSAVDRKLLAKMQGKGWRANIKPNVVVAKDGSGQFKTIKDAIASYPRGNKGRYVIYVKAGVYDEYITIPKDAVNILMYGDGPMRTIVTGRKSFAAGVKTMQTATFANTATGFLGKAMKFENTAGPAGHQAVAFRNQGDMSALVGCHIVGYQDSLYVQTNRQFYRNCVISGTVDFIFGTSATLIQHSTIIVRKPGKGQYNTVTADGSEEKSLNTGIVIQGSQIVPEATLYPERFTTRSYLGRPWKPLAKTVIMESTIGDFIHPDGWTLWEGANNHNTCYYAEYANNGPGANVARRIKWKGYHGVISRAEATKFTAGMWLQAGPTSAPIWLKALRVPHYLGFTA* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4747 573 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 194 IPR006501 GO:0004857
Mal3g4747 573 Pfam Plant invertase/pectin methylesterase inhibitor 43 192 IPR006501 GO:0004857
Mal3g4747 573 Gene3D - 249 570 IPR012334 -
Mal3g4747 573 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Mal3g4747 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 197 IPR035513 -
Mal3g4747 573 PANTHER PECTINESTERASE 3 571 - -
Mal3g4747 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 197 IPR035513 -
Mal3g4747 573 Pfam Pectinesterase 255 550 IPR000070 GO:0030599|GO:0042545
Mal3g4747 573 PANTHER PECTINESTERASE 3 571 - -
Mal3g4747 573 SMART PMEI_2 37 192 IPR006501 GO:0004857
Mal3g4747 573 SUPERFAMILY Pectin lyase-like 252 551 IPR011050 -
Mal3g4747 573 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Mal3g4747 573 CDD PMEI-like_3 45 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4747 Mal-Chr3 127454731 127456717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4747 1 571 Carbohydrate Esterase AT2G47030 40.692 1.26e-144 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4747 K01051 - gmx:100781507 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4747 3 127454731 127456717 Mal1g1615 1 21097770 21099583 PCT
Mal1g1614 1 21091164 21093111 Mal3g4747 3 127454731 127456717 PCT