Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4743 ATGATGGAAGATGCATTCTCATCAGCGAAGATTTCAGTATGGTGGGACATAGAAAACTGCCAAGTCCCAAGAAACTTCGACGCTAACTCCATCGCTCAAAACATCACCACCGCTCTCTTCAACTCCAACTTCCATGGCCCTCTCTCCATTTCCGCTTACGGCGACACCACTCGCATTCCCTTTCACGTTCAACACGCTCTCTCTTCCACCGGCATTTCCCTCCACCACGTCCCCGCCGGTGCGAAAGATGCTAGTGATAAGAAGATACTCGTTGATATGCTGTTATGGGCTGTTGATAACCGTGCACCTGCTAATTATTTGTTGATTTCTGGTGATAGAGATTTTTCAAACGCGCTTCATCAACTTCGTATGAGAAGGTATAACATTCTTCTAGCTAGACCTTCTTGCTTTTCTGCACCTCTTACTGCTGCTGCCAAAATCGTTTGGAAATGGCCTATACTCATTGCTGGTGGTCCCCCTTTCTTCACTGAACAAAAAAACCCTAATTGCTCTAGGAAACTTGTGTATCAGCCTAAACCGGTTGCTAATTCTGAACAATCAAAGACTTCAAAACTGTTTAAATTAGCCCCACATGAATTCTTTTCTAGTAATGACCCCACAATTAGTACTAATCTTCAAACCATTACTTGTTCTAGTGATGATAATCATGATTTACATCATAATAAGCAATTAATGCTTCCGATTTCTCATGGTTATGATGATGCAACTATTTTGTCTGATACCCATGTTGGAAATGCTAGTTCTGAACAATTGTTGATTCCTAATGTAAGGAAAGTTAAGAGTTTGCCAGCATTATCAATTTATGAGAGCTTGCAAGGACTTGTTGATGTTATTCTAGTCACGTTGAATACATTGAAGGATGAAATGGTTTTTCCTACTGAAGGAAATATAGTTGATTGCATTCGTTGTGATGATTCCAAATATCAGATAGTTGATATTAGGAAGGGTTTGGATTGTGCAATTGAACAACAGAAGGTGGTTAAACGAGTCTACGGCGCATTACGTGTGTATGTTGTTGCAAATGAGAATCTATGGAAGTGTGTGAATCCTTTAGGTGGTTTGCCGAGTCATTTCGCAGAAGCAATTTGGGTTAGAATTGAGCAATTCCTTGCTACATCCTCAGGAAGATCCGCGATTTTGGCGTCTCGTAGCAGATATGAAGCAGCATTAACTCTAAAGAGATTGTGTCTTGAGGAGCTTGTGTTGGGTGATGTACTAAAGATTTTGGAGATTATAATCACATTCAAGAAATGGATCATACCTTATCATTCTAGATGGCAGCCAATTACCATTTCACTTTAA 1323 0.4029 MMEDAFSSAKISVWWDIENCQVPRNFDANSIAQNITTALFNSNFHGPLSISAYGDTTRIPFHVQHALSSTGISLHHVPAGAKDASDKKILVDMLLWAVDNRAPANYLLISGDRDFSNALHQLRMRRYNILLARPSCFSAPLTAAAKIVWKWPILIAGGPPFFTEQKNPNCSRKLVYQPKPVANSEQSKTSKLFKLAPHEFFSSNDPTISTNLQTITCSSDDNHDLHHNKQLMLPISHGYDDATILSDTHVGNASSEQLLIPNVRKVKSLPALSIYESLQGLVDVILVTLNTLKDEMVFPTEGNIVDCIRCDDSKYQIVDIRKGLDCAIEQQKVVKRVYGALRVYVVANENLWKCVNPLGGLPSHFAEAIWVRIEQFLATSSGRSAILASRSRYEAALTLKRLCLEELVLGDVLKILEIIITFKKWIIPYHSRWQPITISL* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4743 440 CDD PIN_limkain_b1_N_like 10 134 - -
Mal3g4743 440 Pfam NYN domain 10 145 IPR021139 GO:0004540
Mal3g4743 440 Gene3D - 6 151 - -
Mal3g4743 440 PANTHER LIMKAIN B LKAP 3 190 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal3g4743 440 PANTHER LIMKAIN B LKAP 258 431 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal3g4743 440 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 258 431 - -
Mal3g4743 440 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 3 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4743 Mal-Chr3 127340849 127342350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4743 3 163 C2H2 Transcription Factor Family AT5G61190 68.323 7.25e-71 240