Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4713 ATGCTGGATATTCAGCAAGAACAAAGGCTCAATTTCACCGGCGGAGACCCAACAAACTCTCAATTTCCCCTCGATTCTGGATTTCCTCCTCCTCCATCGCCCCCTAATCATAATTATTCCATCCCTCGCAAACGACCCTGGGGACCTCCTCAAGATCAAGTGGATGTTACAGGTCATGTTAAAGTTTACGTTGCACCAGTTCCCAGAACTGCATCTGAGGCTGATGTCCGCCTTGTGTTCGAAGGATATGGAACTATTGTTGAGGTCGTTCTTTTAAGGGACAAGGCAACTGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTCGATGAAGCTGACATGGCTATTAAGGCTTTAAGCAATCAGTATACGTTTCCTGGAGAATCATCACCTGTTGTTGTCAGATTTGCCGATCGTAAACGTGAACGTTTTGGGCTTCGAGGCTTTGGTCGAAGCATGGAAAAGGAAGATCCTCCCGATGTGGTGGGTAAAGTTTATGTTGGTTGCATCAACCATGAAGCTTCAAGACAGGAAATTGAAGAAATATTTTCCCCTTACGGGCATTTAGAAGACGTCGTCATCTTGCGGAATCGGGGATATGGTTTTGTCAAATTTTCTAACAGAGAGATGGCGTTGGCAGCAATCAAAGGGTTGAATAGAACATTCACGATGAGAGGTTGTGATCAACCATTAATTGTTCGTTTTGCGGAACCTAAGAAACCTAAGATGGGAGAATCAAGGGGAAACTACTTACCTGCAAATGCAAATTATGGTCCCATTTCTCAAGAACAAGCAGTTTGGCCACTACCAAATTTTTGTGATCCCAATACTGGAGGGAGTAATGTGCATATGGCTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGCTCATATGCCAAACTGGCAACCTGGTGCTACTGTTGTACAGCAACAATTTCTTCCCCAACATGTACATTCACAATTGACTTCGATGCCTTTACGACCAGTTCAAGCTCCCAACTTTTCTTCTCAACCGTTTATTACTGAGGTGCAGAGACAATTTCATCCAGCAGATTCATCGGTCCGAAATATAGAGCAGCAGCTAAGTTCTCAGCTGCCTACTCAGACCGAACGTAACAATACAGTTGCTGGCAGTACCTCACCTGATCTGTGTACAAATCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCTGAGGGTAACAAGTACTACTACAACTGTGTCACTTGCGAAAGCAGATGGGAAAAGCCAGAGGAGTATGCTTTGTATGACAAAGAATCACAGAAGCAGCATGAGCAAGATGATCATAGCTTACTTCAACCGCAATTGTCATTATCTTCATCTCAAGAAGTTTCTCAAAAGCAGCAGAAAACAAATCATGATGATCACATGCAGTCAGAAACAAGTCCTGTTGTTGAACAGGTGTGA 1455 0.4378 MLDIQQEQRLNFTGGDPTNSQFPLDSGFPPPPSPPNHNYSIPRKRPWGPPQDQVDVTGHVKVYVAPVPRTASEADVRLVFEGYGTIVEVVLLRDKATGARQGSCLVKYSTFDEADMAIKALSNQYTFPGESSPVVVRFADRKRERFGLRGFGRSMEKEDPPDVVGKVYVGCINHEASRQEIEEIFSPYGHLEDVVILRNRGYGFVKFSNREMALAAIKGLNRTFTMRGCDQPLIVRFAEPKKPKMGESRGNYLPANANYGPISQEQAVWPLPNFCDPNTGGSNVHMAPHHSRLPHQQVNAHMPNWQPGATVVQQQFLPQHVHSQLTSMPLRPVQAPNFSSQPFITEVQRQFHPADSSVRNIEQQLSSQLPTQTERNNTVAGSTSPDLCTNPQDEDFPECDWSEHYCPEGNKYYYNCVTCESRWEKPEEYALYDKESQKQHEQDDHSLLQPQLSLSSSQEVSQKQQKTNHDDHMQSETSPVVEQV* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4713 484 PANTHER RNA BINDING PROTEIN 52 470 - -
Mal3g4713 484 MobiDBLite consensus disorder prediction 1 52 - -
Mal3g4713 484 ProSitePatterns WW/rsp5/WWP domain signature. 401 426 IPR001202 GO:0005515
Mal3g4713 484 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 52 470 - -
Mal3g4713 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 141 IPR000504 GO:0003723
Mal3g4713 484 Gene3D - 51 146 IPR012677 -
Mal3g4713 484 Gene3D - 153 247 IPR012677 -
Mal3g4713 484 Gene3D - 389 447 - -
Mal3g4713 484 SMART ww_5 396 428 IPR001202 GO:0005515
Mal3g4713 484 MobiDBLite consensus disorder prediction 367 394 - -
Mal3g4713 484 MobiDBLite consensus disorder prediction 1 23 - -
Mal3g4713 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 240 IPR000504 GO:0003723
Mal3g4713 484 SUPERFAMILY RNA-binding domain, RBD 24 150 IPR035979 GO:0003676
Mal3g4713 484 MobiDBLite consensus disorder prediction 367 390 - -
Mal3g4713 484 Pfam WW domain 399 426 IPR001202 GO:0005515
Mal3g4713 484 MobiDBLite consensus disorder prediction 24 39 - -
Mal3g4713 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 225 IPR000504 GO:0003723
Mal3g4713 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 129 IPR000504 GO:0003723
Mal3g4713 484 SMART rrm1_1 61 137 IPR000504 GO:0003723
Mal3g4713 484 SMART rrm1_1 166 236 IPR000504 GO:0003723
Mal3g4713 484 MobiDBLite consensus disorder prediction 446 463 - -
Mal3g4713 484 SUPERFAMILY RNA-binding domain, RBD 164 251 IPR035979 GO:0003676
Mal3g4713 484 SUPERFAMILY WW domain 400 431 IPR036020 GO:0005515
Mal3g4713 484 MobiDBLite consensus disorder prediction 434 484 - -
Mal3g4713 484 CDD WW 399 428 IPR001202 GO:0005515
Mal3g4713 484 ProSiteProfiles WW/rsp5/WWP domain profile. 401 428 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4713 Mal-Chr3 126991416 126998040 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4713 62 245 Eukaryotic Initiation Factors Gene Family AT3G16380 28.426 6.49e-11 62.8