Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4688 ATGGAAGAGGTTGTGTTACTAATCGATGATTTAAGGTTACTTTCTGGAATTTCTCGCTGTAGAATATGCCATGATGAAGAGTTTGAAAGCTCCAAAACCTTGGAAGCACCTTGTTCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGTAACGAGAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATATGAACCTGGATATACAGCTCCTCCTCCAAAGAAGTCAGAGATAAATGATGAAGCAATGTCCATAAGGGGGGAGCAAGAAGCTTCAAACGCGATAAGAGAAACTGTGGTGGAAGGAATTGTATTAGAAAGTGATTACTCAGAAGAATGCAGCTCTACCACTAACAGAAGCGCGTTTCACTGTCGATCATTGGCATTAGCTTTTACACTTGTGTTACTAGTAAGACATTGTTTGGTGGTGCCAACAAGTGGAACGGAAGATTACCCATTTACACTTCTTACTGTCATTGTTCTAAAAGCTTGTGGAATTATTATACCCATGTACATAGTTACTAAGACAGTCGGAGCCATTCTGAATAGCATTAGGCGCTATCAAGGTTCTGACTACGACACATCGCTCTCTGATGATGATGGCAGAAATGAAGAGCATGATGAAGAAAATTTAATACATTCATAG 666 0.3949 MEEVVLLIDDLRLLSGISRCRICHDEEFESSKTLEAPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTAPPPKKSEINDEAMSIRGEQEASNAIRETVVEGIVLESDYSEECSSTTNRSAFHCRSLALAFTLVLLVRHCLVVPTSGTEDYPFTLLTVIVLKACGIIIPMYIVTKTVGAILNSIRRYQGSDYDTSLSDDDGRNEEHDEENLIHS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4688 221 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Mal3g4688 221 SMART ringv_2 19 68 IPR011016 GO:0008270
Mal3g4688 221 MobiDBLite consensus disorder prediction 199 221 - -
Mal3g4688 221 CDD RING_CH-C4HC3_MARCH 20 67 - -
Mal3g4688 221 Pfam Protein of unknown function (DUF3675) 73 183 IPR022143 -
Mal3g4688 221 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 209 IPR033275 -
Mal3g4688 221 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Mal3g4688 221 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Mal3g4688 221 SUPERFAMILY RING/U-box 19 72 - -
Mal3g4688 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Mal3g4688 221 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4688 Mal-Chr3 126725922 126728305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4688 20 67 C3H Transcription Factor Family AT2G37950 44.898 5.04e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4688 - - mtr:MTR_7g109460 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4688 3 126725922 126728305 Mal1g1671 1 21816918 21819647 PCT