Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4674 ATGGAAGATTCTGAGGCCAAATCTGCTGAAAAAACCCAGCAAACTGAACAAGTGTGTAGTTTCTTTAGAAAACCAGTCAATAAGAAGAACATGAGGAAACGAACTATTGAGACTGATGATAACGAGGATGACTCGAACAATGAAGAGTCTTTGATGCATGTTCAGAAAAAAAACGTCAAGCCTGATAATAAGTTGTTCTTTTCCACCGGCTCTTCAAAGAGCGCCGCATCTTCTAAATCGAATGAAGAATCCGAGAAACCCAGCTTTCATTTTGAGTCTTCTAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACGGCGACTTTGGAGACTGAGACTGATTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCCACGGAGAGTCTCAAGGGTAAGAGTACTGGTTCCGAGGATGTAAAATTATACAAGGGAATCAATAATTACACAGATCATAAGGCTGGATTTCGTAGAGAGCAAACAATTGCAAGTGAAAAGGCTGGTGGGTCACACGGCCCTCTCAGGGCTTCAGCTCACATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGATATATGCAAGGATTATAAGGAAACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGTGATTACAAATCTGGGTGGCAGATGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAGGATGAGATTGGCTGCAGGTGAGGATGCGGAGGAGGAAGGTGCTAATTTGAATGATGATGATGATGAAGATGATGATTCATTACCGTTTGCATGTTTCATCTGTAGAAATCCATTTTCGGATCCTGTCTCAACCAAGTGCAAACACTACTTCTGCGAACATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCTACGCTTGGCATTTTTAATGTGGCTCATGAGATACGAAAGAAGATGGCTGAGGATAATAAATAA 993 0.4149 MEDSEAKSAEKTQQTEQVCSFFRKPVNKKNMRKRTIETDDNEDDSNNEESLMHVQKKNVKPDNKLFFSTGSSKSAASSKSNEESEKPSFHFESSKEIQVQHDSKATATLETETDFSKDARAIRERALKQATESLKGKSTGSEDVKLYKGINNYTDHKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWDEAEKARRMRLAAGEDAEEEGANLNDDDDEDDDSLPFACFICRNPFSDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDNK* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4674 330 ProSitePatterns Zinc finger RING-type signature. 285 294 IPR017907 -
Mal3g4674 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 327 IPR013083 -
Mal3g4674 330 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 10 329 - -
Mal3g4674 330 SUPERFAMILY RING/U-box 269 312 - -
Mal3g4674 330 MobiDBLite consensus disorder prediction 79 99 - -
Mal3g4674 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 217 IPR000571 GO:0046872
Mal3g4674 330 MobiDBLite consensus disorder prediction 1 101 - -
Mal3g4674 330 ProSiteProfiles Zinc finger RING-type profile. 270 308 IPR001841 -
Mal3g4674 330 MobiDBLite consensus disorder prediction 62 78 - -
Mal3g4674 330 CDD RING-HC_RNF113A_B 268 308 - -
Mal3g4674 330 Gene3D - 189 223 - -
Mal3g4674 330 SUPERFAMILY CCCH zinc finger 190 222 IPR036855 GO:0046872
Mal3g4674 330 Pfam Zinc finger, C3HC4 type (RING finger) 269 311 - -
Mal3g4674 330 SMART ring_2 270 307 IPR001841 -
Mal3g4674 330 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Mal3g4674 330 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Mal3g4674 330 PANTHER ZINC FINGER PROTEIN 183 10 329 IPR039971 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4674 2 328 C2H2 Transcription Factor Family AT1G01350 68.502 8.64e-165 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal3g4674 zf-C3HC4_3 1.8e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4674 K13127 - gmx:100787434 529.25