Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4636 ATGAGTAGACATTCGAGCAGAACCGTGTATGTTGGGAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTATGAAGTATGGACACATAACTCACATTGACCTAAAGGTTCCGCCAAGGCCCCCTGGCTATGCATTTGTGGAGTTTGAAGATGCTCAAGATGCCGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGATTACGGGTGGAGGCTGCACATGGTGGTCGTGGTAATTCATCTTCAAGAGATCGACATAGTAGTCACAGCAATGGCCGAGGTGGACGCGGAGTATCCAGGCGCTCTGAATATCGTGTTCTAGTCAATGGACTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGGGGTACCACTGGGATTGTGGATTACACAAACTACGATGATATGAAATATGCTATAAAAAAACTTGATGACTCTGAGTTCCGGAATGCTTTTTCCAAGTCTTACGTTCGGGTGAGGGAATATGATTCGAGGCGGGACTCTAGAAGTCCTGGTCGTGGCCCTTCTCATTCTAGAGGAAGAAGCTATAGCCGCAGTCGTAGTCGCAGCCGCAGCCGTAGCTACAGTCCAGGCCATAGCCAAAGCAAATCTCCTAAGGGTAAATCCTCACAACGTTCACCAGCCAAATCTCCAGCAAGATCAGTTTCCCGCTCCAGATCTAGATCCCGTTCGTTATCTGGATTGGAAACTTGCGGCATACTGGAAATTGGAAATTAG 813 0.476 MSRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGNSSSRDRHSSHSNGRGGRGVSRRSEYRVLVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSRSPGRGPSHSRGRSYSRSRSRSRSRSYSPGHSQSKSPKGKSSQRSPAKSPARSVSRSRSRSRSLSGLETCGILEIGN* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4636 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Mal3g4636 270 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Mal3g4636 270 MobiDBLite consensus disorder prediction 185 270 - -
Mal3g4636 270 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mal3g4636 270 SMART rrm1_1 112 183 IPR000504 GO:0003723
Mal3g4636 270 Gene3D - 2 110 IPR012677 -
Mal3g4636 270 MobiDBLite consensus disorder prediction 214 259 - -
Mal3g4636 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mal3g4636 270 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 255 - -
Mal3g4636 270 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 255 - -
Mal3g4636 270 CDD RRM2_SF2_plant_like 111 186 - -
Mal3g4636 270 MobiDBLite consensus disorder prediction 80 107 - -
Mal3g4636 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Mal3g4636 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mal3g4636 270 CDD RRM1_SF2_plant_like 8 78 - -
Mal3g4636 270 MobiDBLite consensus disorder prediction 185 199 - -
Mal3g4636 270 Gene3D - 111 188 IPR012677 -
Mal3g4636 270 MobiDBLite consensus disorder prediction 80 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4636 Mal-Chr3 126209248 126212248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4636 2 189 Eukaryotic Initiation Factors Gene Family AT4G34110 25.381 1.24e-06 47.4