Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4633 ATGAAGTTCTGTAAAAAATACCAAGAATACATGCAAGGCCGGGATCAAAAGCTTCCTGAGGTTGGATTCAAGAAGCTCAAAAAAATCTTGAAGAAGTGTCGTAGAGATTCTTCTCAATCCCATAAACCATCTCAAACCTGCCCTGACCATTGCACAGTGTGTGATGGGACATTTTTCCCTTCACTTATGAGTGAAATGTCTGAGATAGTTGGCTGCTTTAATCAGCGTGCACAGAAATTGCTTGAGCTACATCTTGCTTCTGGTTTCAGAAAGTACATTTTATGGTTCAAAGGCAAATTTCATAAAAATCATACTGCTCTTATTCAAGAAGGTGAAGATCTTGTTACTTATGCACTCATAAATGCCACCGCAATCCGAAAAATATTAAAGAAATATGATAAGGTTCATTATTCGAAGCAAGGGCAATTGTTTAAGTCAAAAGTTCAGAGTATGCACAAGGAAATTCTTCAAAGTCCATGGCTTTGTGAACTTATGGCCTTCCACATCAATTTAAGAGAAACAAAGGTTAATTCAAGGAAGTCACCTGCTTTGTTTGATGAATGTTCTCTCACATTTAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCTATCAAAATTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCATATATTCTGCTATATTTGCGCTTGCTCGGCTGCATCAGTATCTATCGTTGATGGACTTAAGTCAGCAAATCCTAAAGAAAAATGTCCTTTATGCCGGGAGCGTGCAGTTTATGAAGGTGCTGTGCACTTGGAAGAACTAAATATTCTGTTAGGCCGAAGCTGTCATGAATACTGGGAAGAAAGGCTTCAATCTGAGAGGGTAGAGAGGATTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGAGCTTTCATGGGCGTCTAA 960 0.3875 MKFCKKYQEYMQGRDQKLPEVGFKKLKKILKKCRRDSSQSHKPSQTCPDHCTVCDGTFFPSLMSEMSEIVGCFNQRAQKLLELHLASGFRKYILWFKGKFHKNHTALIQEGEDLVTYALINATAIRKILKKYDKVHYSKQGQLFKSKVQSMHKEILQSPWLCELMAFHINLRETKVNSRKSPALFDECSLTFKDGKPSLTCELFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKSANPKEKCPLCRERAVYEGAVHLEELNILLGRSCHEYWEERLQSERVERIKQIKEHWDSQCRAFMGV* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4633 319 CDD SPX_BAH1-like 2 142 - -
Mal3g4633 319 ProSiteProfiles SPX domain profile. 1 146 IPR004331 -
Mal3g4633 319 ProSiteProfiles Zinc finger RING-type profile. 215 264 IPR001841 -
Mal3g4633 319 SMART ring_2 215 263 IPR001841 -
Mal3g4633 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 317 IPR013083 -
Mal3g4633 319 SUPERFAMILY RING/U-box 208 267 - -
Mal3g4633 319 Pfam Zinc finger, C3HC4 type (RING finger) 212 265 - -
Mal3g4633 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 319 IPR033326 -
Mal3g4633 319 ProSitePatterns Zinc finger RING-type signature. 230 239 IPR017907 -
Mal3g4633 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4633 Mal-Chr3 126168536 126170802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4633 212 264 C3H Transcription Factor Family AT4G28270 41.379 8.46e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4633 K16275 - gmx:100787904 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1740 1 22617241 22621110 Mal3g4633 3 126168536 126170802 PCT