Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4632 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGCCAGGAGCAGAAGAAACTTCCTGAGGTTGGATTCAAGAAGCTCAAAAAAATCTTGAAGAAGTGTCCTAGAGATTCCTCTCATTCTCAATCACATAAACCATCTCAAACCTGCCACGACCATTGCTCAGTGTGTGATGGGACATTTTTCCCTTCACTTATGAGTGAAATGTCTGAGATAGTTGGCTGCTTTAATCAGCGTGCACAGAAATTGCTTGAGCTACATCTTGCTTCTGGTTTCAGAAAGTACATTTTATGGTTCAAAGGCAAATTTCATAAAAATCATACTGCTCTTATTCAAGAAGGTGAAGATCTGGTTACTTATGCACTCATCAATGCCACCGCAATCCGAAAAATTCTAAAGAAATATGATAAGGTTCATTATTCAAAGCAAGGGCAGCTGTTTAAATCACAGGTTCAGAGTATGCACAAGGAAATACTTCAAAGTCCATGGCTTTGTGAACTTATGGCATTCCACATCAATTTAAGAGAAACCAAGGTCAATTCAAGGAAGGAAACTGCTTTGTTTGATGAATGTTCTCTCACATTTATTGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCTATCAAAATTGACATTGACTTGACTTGTTCTATATGCTTGGACACCGTGTTTGATCCAGTTTCTCTGACTTGCGGCCATATATTCTGTTACATTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTCGATGGACTTAAGGCAGCCAATCCTAAAGAAAAGTGTCCTCTATGCCGAGAGCGTGCAGTTTATGAAGGTGCTGTGCATTTGGAAGAACTAAATATTCTGTTAGGCCGAAGCTGTCATGAATACTGGGAAGAAAGGCTTCAATCTGAGAGGGTAGAGAGGATTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGAGCTTTCATGGGCGTCTAA 969 0.3973 MKFCKKYQEYMQGQEQKKLPEVGFKKLKKILKKCPRDSSHSQSHKPSQTCHDHCSVCDGTFFPSLMSEMSEIVGCFNQRAQKLLELHLASGFRKYILWFKGKFHKNHTALIQEGEDLVTYALINATAIRKILKKYDKVHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVNSRKETALFDECSLTFIDGKPSLTCELFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKAANPKEKCPLCRERAVYEGAVHLEELNILLGRSCHEYWEERLQSERVERIKQIKEHWDSQCRAFMGV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4632 322 Pfam Zinc finger, C3HC4 type (RING finger) 215 268 - -
Mal3g4632 322 SMART ring_2 218 266 IPR001841 -
Mal3g4632 322 ProSiteProfiles Zinc finger RING-type profile. 218 267 IPR001841 -
Mal3g4632 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 322 IPR033326 -
Mal3g4632 322 ProSitePatterns Zinc finger RING-type signature. 233 242 IPR017907 -
Mal3g4632 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 320 IPR013083 -
Mal3g4632 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 322 - -
Mal3g4632 322 SUPERFAMILY RING/U-box 211 270 - -
Mal3g4632 322 CDD SPX_BAH1-like 2 145 - -
Mal3g4632 322 ProSiteProfiles SPX domain profile. 1 149 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4632 Mal-Chr3 126141336 126143950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4632 215 267 C3H Transcription Factor Family AT4G28270 41.379 8.83e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4632 K16275 - gmx:100787904 563.918