Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4606 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGAGAAGAAGTTTATGATGAAAGCAAGCAGCAACAGGTACAAAATAATCTCAATGATTCAAGCACAGGACCATCCGGTGCTTGCAATAGCAATGGTTCCACTAATCAACAGCAAAACAAGAAGAAAAGAAACCTTCCTGGAACACCAGATCCTAGTGCTGAAGTGGTTGCTTTATCACCAACAACATTAATGGCAACAAATAGATTTGTGTGTGAGATATGCAACAAGGGATTTCAGAGGGACCAGAATCTTCAGTTACACCGAAGAGGTCACAATCTTCCTTGGAAACTTAGGCAAAGAACAAGTGCAGAGGTGAAGAAAAAGGTTTATGTGTGTCCTGAGCCATCATGTGTTCACCACAACCCAGCTCGTGCGTTAGGCGACCTTACTGGCATCAAAAAACATTTTAGCCGTAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCTGTTCAATCTGATTGGAAGGCTCACCAGAAAACATGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGAGAGACAGTTTTATAACTCACAGAGCTTTCTGTGATGCATTGACTGAAGAAAACAACAGAGTAAACCAAGGATTAACTAGTGGCATGCCACCAAACTTACAAAATCAAATGCATGATCCTATCTCTACTATGCCTCTAAAATCTAGTTCCAACACTCCATCCGAAATAAACAACGAATATGACCCTAAAAACTCACTAAGATCTCCAACTCAAGAACATGCTCCAACATCATTCAGATCAACCAACAATGCATGTGGTGGCATGTTCTCAACTAGTGCAGGTGCACTTTTTGGTGGTCCAAAAACCTTACCTCCCACTTCTTCAACCCTTCAACTCAGTTCCAATTCCAACAGCTTCAATTACTTCAATGACAGCAAAAACGGAGGACTAGTTTCTGGCACGGCTCAAATGTCGGCAACAGCTTTATTACAAAAAGCAGCACAAATGGGTGCAACTGCAAGCAATAGTGGTAATTCCTCCATGATGCAGAAAAGCTTTGTTAGTAGCATGGTTAGTCCTAATCATATTTCTGGTCCCATGATGATGCATCATAATCATAACCAAATTCAACCCTCTTATGAACACTTTAATCCACTACAGCATGATTTATCTAACATGGCTGGTGTTAGTGGTGGTGGAGCATTTACAAACCAATTGTTTCAAAAAGAACAACAAGAAATTTCATTATTGTTTGATAACAATACTAGTGTGTCTACAATAAATAATGATATTGGAATGTTTAGCCATGGATTGATGAAGAATGTTACACAAGAGGTTAGTAATTGTTCAAATTTGATGCATGGAAGTGATGTGGCAACAGTTCATGATTTCTTGGGAATTGGTGGTTCAAATTCAAGTTTGCATGAACCACAACAACAAAGATTGGAAGCATTAAGTCAACAGAGGTTGGAAATTATGAATAATTTTCATCATCATCATCTTCCACATGACGATTCAGCAATGGAGAAATCAATTTGGGATGTTTGA 1581 0.3884 MSNISGDEGSFSSGNNGEEVYDESKQQQVQNNLNDSSTGPSGACNSNGSTNQQQNKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSAEVKKKVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQNQMHDPISTMPLKSSSNTPSEINNEYDPKNSLRSPTQEHAPTSFRSTNNACGGMFSTSAGALFGGPKTLPPTSSTLQLSSNSNSFNYFNDSKNGGLVSGTAQMSATALLQKAAQMGATASNSGNSSMMQKSFVSSMVSPNHISGPMMMHHNHNQIQPSYEHFNPLQHDLSNMAGVSGGGAFTNQLFQKEQQEISLLFDNNTSVSTINNDIGMFSHGLMKNVTQEVSNCSNLMHGSDVATVHDFLGIGGSNSSLHEPQQQRLEALSQQRLEIMNNFHHHHLPHDDSAMEKSIWDV* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4606 526 Gene3D Classic Zinc Finger 139 219 - -
Mal3g4606 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Mal3g4606 526 MobiDBLite consensus disorder prediction 223 276 - -
Mal3g4606 526 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Mal3g4606 526 Gene3D Classic Zinc Finger 63 131 - -
Mal3g4606 526 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Mal3g4606 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 508 - -
Mal3g4606 526 SMART c2h2final6 85 107 IPR013087 -
Mal3g4606 526 SMART c2h2final6 161 181 IPR013087 -
Mal3g4606 526 SMART c2h2final6 126 156 IPR013087 -
Mal3g4606 526 MobiDBLite consensus disorder prediction 1 70 - -
Mal3g4606 526 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Mal3g4606 526 MobiDBLite consensus disorder prediction 1 61 - -
Mal3g4606 526 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4606 Mal-Chr3 125916311 125919153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4606 32 367 IDZ Gene Family AT3G50700 53.699 3.49e-115 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g4606 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4606 - - cam:101505978 827.394