Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4583 ATGGGTGGTTCTCCTAGAAACCCCAACCCTTCACCAAAACTAGTTCGACCCTGTGATTATTGTGGCAATTCAAACGCAGTTCTATACTGCAGAGCAGATTCTGCAAAACTCTGTTTCTCTTGTGATCGTGAAGTTCACTCCACAAACCAACTCTTCTCAAAGCACACACGCTATCTAATCTGTGATTCATGCAATGATTCCCCTGCTACAATACTCTGTTCAACAGAATCCTCTGTTTTCTGTCAAAACTGTGATTGGGAAAATCACAACCTTTCACTATCTTCACCTCATGAACGAAGGCCTCTTGAGGGTTTTACAGGGTGCCCTTCAGTTACTGAGCTTTTATCCATTTTGGGGTTGCAGGATATTGGAAAAAAATCGTTGCTTTTGCCTCAGGAAAGTGTAGGAGATGCGTTTGTGGGGTATGAGATTGAAGGGCTTTCTGATATGTTTGTTTGGGATGCTCCTTCTTTTGTTACTCTTGATGATCTTATTTCTTCTTCTCCTTCTTCTCATAACTATCGTGCTATGGAGGTTCCTCCTTTGCCCAAGAATCGTCAGGCTGCTTGTGGTAGACACAAAGAAGAGATTTTAAATCAGCTTCGTGAGATGACAAAGTCTGAGCCCTATGATCCTGAAGAGTATATACCACCAGCAAATTTATCTACAGGTTTTGAACGCGACATTAAGGCTGATATCGTTCCTTCACATGAGTGGCTTAGAGAAAGCAGCGAGCCTATGTATCAAGTTGTACCTGTTGATACATCATTCAAAGCTCATCATACTGAAGAAATTCCAGTTAAACATTTTGTATCTGCTGTTGAGGAGCCTCATACCGATGGTAACAACGGAGGGACACCTTCAGAATCTCTTAAGTCTGAAACTTTGTCAACTACTCCTAAAGCTGTTCCTCCTCCATATGAGTTAGCGAGTCAAGAAAGGGATTCTGCATTATTACGGTACAAGCAAAAGAAGAAAACAAGAAGATATGACAAGCATATAAGGTATGAATCACGTAAAGTTCGGGCGGAGAGCAGGACAAGAGTTAAGGGCCGATTTGCCAAGATAGAGCACTGA 1077 0.4197 MGGSPRNPNPSPKLVRPCDYCGNSNAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRYLICDSCNDSPATILCSTESSVFCQNCDWENHNLSLSSPHERRPLEGFTGCPSVTELLSILGLQDIGKKSLLLPQESVGDAFVGYEIEGLSDMFVWDAPSFVTLDDLISSSPSSHNYRAMEVPPLPKNRQAACGRHKEEILNQLREMTKSEPYDPEEYIPPANLSTGFERDIKADIVPSHEWLRESSEPMYQVVPVDTSFKAHHTEEIPVKHFVSAVEEPHTDGNNGGTPSESLKSETLSTTPKAVPPPYELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRTRVKGRFAKIEH* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4583 358 Pfam B-box zinc finger 16 57 IPR000315 GO:0008270
Mal3g4583 358 Pfam B-box zinc finger 58 102 IPR000315 GO:0008270
Mal3g4583 358 MobiDBLite consensus disorder prediction 279 300 - -
Mal3g4583 358 Pfam CCT motif 314 355 IPR010402 GO:0005515
Mal3g4583 358 CDD Bbox1_BBX-like 17 60 - -
Mal3g4583 358 ProSiteProfiles Zinc finger B-box type profile. 56 102 IPR000315 GO:0008270
Mal3g4583 358 MobiDBLite consensus disorder prediction 275 332 - -
Mal3g4583 358 ProSiteProfiles CCT domain profile. 314 356 IPR010402 GO:0005515
Mal3g4583 358 CDD Bbox1_BBX-like 60 102 - -
Mal3g4583 358 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Mal3g4583 358 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 15 358 - -
Mal3g4583 358 SMART bboxneu5 13 60 IPR000315 GO:0008270
Mal3g4583 358 SMART bboxneu5 61 102 IPR000315 GO:0008270
Mal3g4583 358 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 15 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4583 Mal-Chr3 125653642 125656172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4583 16 329 C2C2-CO-like Transcription Factor Family AT2G47890 42.812 2.07e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mal3g4583 zf-B_box 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4583 - - mtr:MTR_7g108150 666.766