Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4568 ATGGCGGAAGTGAAGGAAGAGAGTAAATCTAATGAAGAGAGTGTGAAATTGTTCGTAGGTCAAGTACCGAAACACATGACGGAAGATGAGTTACTTACATTGTTCAAAGAATTTGCTATAGTTGACGAAGTCAACATCATCAAAGACAAAGCCACTCGCGCTTCCAGAGGTTGTTGTTTCGTGATTTGTCCTTCAAGAGATGAAGCTGATAAGGCAGTTAATGCGTGTCACAATAAGAAAACGTTACCGGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAACGTTTCTGAAGTTGAAGTATCTGCACTTTTCTCCAAATACGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCTTTTTTGAAGTATGAAACTAAAGAACAAGCTCTTGCTGCTTTGGAGGCAGTAAATGGAAAGCACAAAATGGAGGGTTCAAGCGTTCCTTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCTCAGAAAGCACAGTCTCAAGCTTCTAATGTAGGTCATGATTCTCAGCATCCTTCATTATTTGGAGCCATGCCTATGGGTTATGTTCCTCCGTATAACGGTTATGGTTATCAGGCTCCTGGAAGTTATGGGCTCATGCCGTACCGCATGCCACCAATGCAGAATCAACCTGGTTACCACAATATGATGCCTCACATGAATCAAGGAAATGCATTGCGGCCAGATCTCGGCCCCAATATGAATCCTAGAAACTATCATGTGCCTCCTGCAAATTATGTTGGCTCTTATCCTGCTGTGCCAGGGCTACAACATCCAATGGCATATCCTGGAGGAATGATTAGTCCAAGACCTTTGAATAGTCCCCCTGGTTCTGTTTCACCTTCCGGTGGAAATGGCAACTCCGCTACATCATCGGGGTCCAGCAAAAATTCTGGTGGTGGTCAAGCTGAAGGACCACCTGGCGCAAATCTATTTATCTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCCTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTCGTTGACAAAGCTACCGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAAGCTGCTCAATCTGCTATTAGTATGATGAATGGGTGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACCCGGTAAACCTTACTGA 1296 0.4267 MAEVKEESKSNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAVNGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPMQNQPGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPANYVGSYPAVPGLQHPMAYPGGMISPRPLNSPPGSVSPSGGNGNSATSSGSSKNSGGGQAEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKRDNKPGKPY* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4568 431 Gene3D - 100 192 IPR012677 -
Mal3g4568 431 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
Mal3g4568 431 MobiDBLite consensus disorder prediction 314 338 - -
Mal3g4568 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Mal3g4568 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Mal3g4568 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Mal3g4568 431 MobiDBLite consensus disorder prediction 185 208 - -
Mal3g4568 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Mal3g4568 431 Gene3D - 318 423 IPR012677 -
Mal3g4568 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Mal3g4568 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Mal3g4568 431 SMART rrm1_1 347 420 IPR000504 GO:0003723
Mal3g4568 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Mal3g4568 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Mal3g4568 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Mal3g4568 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Mal3g4568 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Mal3g4568 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Mal3g4568 431 MobiDBLite consensus disorder prediction 301 345 - -
Mal3g4568 431 PANTHER RNA BINDING PROTEIN 9 418 - -
Mal3g4568 431 Gene3D - 2 99 IPR012677 -
Mal3g4568 431 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Mal3g4568 431 CDD RRM3_CELF1-6 348 420 - -
Mal3g4568 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Mal3g4568 431 CDD RRM1_2_CELF1-6_like 104 179 - -
Mal3g4568 431 MobiDBLite consensus disorder prediction 193 207 - -
Mal3g4568 431 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 9 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4568 Mal-Chr3 125503225 125507830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4568 347 429 Eukaryotic Initiation Factors Gene Family AT4G34110 36.364 3.53e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4568 K13207 - gmx:100813239 762.296