Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4550 ATGGCTGCCACTAATGCCGGAACCGCTCCCCGTCATCTCTCTCAGAAAGAAGCTGATATCCAAATGATGCTTGCCGCCGATGTTCATCTCGGTACCAAAAACTGCGATTTTCAGATGGAAAGATACATCTTCAAGCGCCGCAACGATGGGATTTATATTATAAATCTGGGGAAAACATGGGAAAAGCTTCAACTTGCTGCTAGGGTTATTGTTGCAATTGAAAACCCACAGGATATCATTGTTCAATCTGCTAGACCTTATGGTCAGAGAGCTGTTTTGAAATTTGCTCAGTATACTGGTGCCAATGCTATTGCTGGAAGGCACACTCCTGGTACTTTCACCAATCAGATGCAAGTTTCATTCAGTGAGCCTAGGCTTCTTATCCTCACTGATCCAAGAACTGATCACCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCAACAATTGCTTTTTGTGATACTGATTCACCTATGCGATATGTCGACATTGGAATCCCTGCCAACAACAAGGGGAAGCACAGTATTGGTTGTCTGTTTTGGCTTTTGGCTAGGATGGTGTTGCAGATGCGTGGTACTATTCGCCCTGGCCTTAAGTGGGATGTCATGGTTGACCTGTTCTTCTATAGAGAACCTGAGGAGGCGAAGGAACAAGAGGAGGATGAAGTTCCTGCACCAGATTATGCCATTGCTGACTTTAATGCAGGTTCTATCCCCAATGATGGACAATGGCCTGCTGCTATCGACCAACCATGGACTGATGCAGTTCCAGAGCCTATTCCAGCAGTTCCCGCTGTCAACTGGGCAGCCCCAGAAGCTGTTGCAGGGGATTGGGGTGAAGCTGTTCCAGCTCCACAAATACCTGCTCCTGGAGTAGAGTCGATCCAAGCAACTGGCTGGGAATAA 906 0.4691 MAATNAGTAPRHLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQVSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVPAPDYAIADFNAGSIPNDGQWPAAIDQPWTDAVPEPIPAVPAVNWAAPEAVAGDWGEAVPAPQIPAPGVESIQATGWE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4550 301 ProSitePatterns Ribosomal protein S2 signature 2. 124 148 IPR018130 GO:0003735|GO:0005840|GO:0006412
Mal3g4550 301 PANTHER 40S RIBOSOMAL PROTEIN SA 5 290 - -
Mal3g4550 301 Hamap 40S ribosomal protein SA [rps-0]. 7 271 IPR027498 GO:0003735|GO:0006412|GO:0015935
Mal3g4550 301 PANTHER 40S RIBOSOMAL PROTEIN SA 5 290 IPR005707 GO:0003735|GO:0006412|GO:0015935
Mal3g4550 301 CDD RPS2 23 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mal3g4550 301 Pfam Ribosomal protein S2 23 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mal3g4550 301 Pfam Ribosomal protein S2 123 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mal3g4550 301 SUPERFAMILY Ribosomal protein S2 15 205 IPR023591 -
Mal3g4550 301 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mal3g4550 301 PRINTS Ribosomal protein S2 signature 99 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mal3g4550 301 PRINTS Ribosomal protein S2 signature 124 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mal3g4550 301 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mal3g4550 301 PRINTS Ribosomal protein S2 signature 20 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mal3g4550 301 PRINTS Ribosomal protein S2 signature 50 59 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mal3g4550 301 MobiDBLite consensus disorder prediction 280 301 - -
Mal3g4550 301 Gene3D - 19 224 - -
Mal3g4550 301 TIGRFAM uS2_euk_arch: ribosomal protein uS2 15 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4550 Mal-Chr3 125338503 125340430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4550 1 293 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.074 1.11e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4550 K02998 - gmx:548014 525.398