Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4518 ATGCTGAGTTTCAGAATGATGAACATGTTGTCCCGTAACAAAACAAGAACAAAGAAGAAAATCACCAAAAAAAAACGAAACAAAAACCCTCACAAACTCAAAAGCCAAACCCGCATTTCCTCCATTACCAAAAACCACCGATCTCTCGTTGAAGAAGAAGAAGAAGACACCGAAGAAGCTTTCAGCATCAAAAGCTCTGCACCATCACACACCCACGGTGTTCAACCCTTAGGCAATCTCTATTTCAACCCAGGTTCAATCAACTCCAGAGATACTGGTTTAGGTAATCTTCATACTCTTACTGATGAGCTTGTTCTTGATATTCTAGGGTTTTTAGATGGTAATAGTTTAGGGGTTTTGGCTTGTGTGAGTAAATCGTTTTATGTTTTCACTAATCATGAACCCATTTGGAGGAATCTTGTGTTGGAGAATCTTGTTGATGGGTTTCAGTATAATGGGTCATGGAAATCTACTTTTGTTTCTAACGGGTACCCTTTGTTTGATATCGTGAGTGGCGATCTTAGGAGTTTTAAAGTTAGAGACTTTTATTCTGATTATCTTTTTCAGAGTTGGTTATGTGCTAATCTTGAAATGAAAAGTGAATGGTTGGAGAGGGATAATATTGTTAGAAAGAGAGGGATTTCAGTTGAGGAATTTGTGGCGAGTTTTGAGGAGGTTAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAGAAATTGGGATAGAGATTATTTGGTGAAGTTATGTGGTGATGATGTTAAGTTTTCGGTTGGGCCTGTGGAGATGAAGCTTAAGGACTATTTTGGGTACTCGGATCAAGTTAGAGAAGAAAGGCCGTTGTATCTGTTTGATCCGAAATTTGCTGAAAAAGTTCCGAAATTGGGTTTGGAATATGAAGTTCCGGTGTATTTTCGGGAGGATTTGTTTGGTGTTTTGGGAAATGAGAGACCTGATTACAGGTGGATTATTATTGGACCAGCTGGATCTGGATCGTCTTTTCACGTTGATCCAAATTCAACTTCAGCTTGGAATGCTGTGATCAAGGGGTCGAAGAAATGGGTATTGTTTCCTCCCGATGTGATTCCGCCGGGTGTTCATCCTAGTCCTGATGGTGCAGAGGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGTGCAACAAAGAATTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGGGAGGTTATCTTTGTGCCCAGTGGTTGGTGGCATATGGTGATCAACCTGGAGGAATCAATTGCCATAACACAAAACTATGTTAGCAGGAGAAATATGTTGAATGTCTTGGAGTTTCTTAAGAGGCCAAACGCGAGCACACTGGTATCTGGAACAAAGGATAGAGTAAATTTGCATGATAAGTTTAAGAATGCTATTGAGGCTTCATTTCCTGGAGCAATTGATGAACTGATCCAAAAAGAAGAAGAGAAAAAGATCCAGCAAAGGAAACTTTCCTTCTGGGATTCTGTTGCAGACACCAGAGTGGGAGCTTTCAAGTTCTCTTTCTAG 1560 0.4 MLSFRMMNMLSRNKTRTKKKITKKKRNKNPHKLKSQTRISSITKNHRSLVEEEEEDTEEAFSIKSSAPSHTHGVQPLGNLYFNPGSINSRDTGLGNLHTLTDELVLDILGFLDGNSLGVLACVSKSFYVFTNHEPIWRNLVLENLVDGFQYNGSWKSTFVSNGYPLFDIVSGDLRSFKVRDFYSDYLFQSWLCANLEMKSEWLERDNIVRKRGISVEEFVASFEEVNKPVLLEGCIDNWDALRNWDRDYLVKLCGDDVKFSVGPVEMKLKDYFGYSDQVREERPLYLFDPKFAEKVPKLGLEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPIECICKAGEVIFVPSGWWHMVINLEESIAITQNYVSRRNMLNVLEFLKRPNASTLVSGTKDRVNLHDKFKNAIEASFPGAIDELIQKEEEKKIQQRKLSFWDSVADTRVGAFKFSF* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4518 519 MobiDBLite consensus disorder prediction 1 72 - -
Mal3g4518 519 Pfam Cupin-like domain 218 437 IPR041667 -
Mal3g4518 519 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 63 516 - -
Mal3g4518 519 MobiDBLite consensus disorder prediction 12 33 - -
Mal3g4518 519 SUPERFAMILY F-box domain 92 159 IPR036047 GO:0005515
Mal3g4518 519 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 63 516 - -
Mal3g4518 519 SUPERFAMILY Clavaminate synthase-like 210 451 - -
Mal3g4518 519 SMART cupin_9 285 454 IPR003347 -
Mal3g4518 519 Gene3D Cupin 187 439 - -
Mal3g4518 519 ProSiteProfiles JmjC domain profile. 294 454 IPR003347 -
Mal3g4518 519 SMART fbox_2 100 140 IPR001810 GO:0005515
Mal3g4518 519 Gene3D - 90 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4518 Mal-Chr3 124992983 124995606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4518 85 442 Glycosyltransferase AT1G78280 38.710 4.30e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mal3g4518 Cupin_8 4.2e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4518 - - gmx:100782241 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4518 3 124992983 124995606 Mal3g4518 3 124992983 124995606 ECH