Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4479 ATGGCTTCTATAGCTTCTGTCTCATCTTCAATCTTCAATAGAATCAACAACCTCTCATTCACTCACTCTTCCATTTCTCTCACCACCACCAACTTCCCTCAAAGACCCATTTCCCATAAACCCCTCAATCTCACCCTCAAGTCTCAAAGTTTCACTCTTTCACCCCTCCCACTTCAATCTTTTCACCCCCCATTTGCTGCCGCAGATGAATTCGAAGCTTCTCAAGACACCACAGTTTCCCAACAAGAAGAACCAGAAACAGAACTAGAATCAGAGGCAGAACCAGAATCAGAGACAGAACCAGAAACCTTAGATAAACCAAAGCAGGAAGAAGAACAGAAAGTAACAACCTCAGACGATGACGGGAGACTCTTTGTGGGGAATTTGCCATTTTCAATAACTTCTTCACAATTGGCTGAGATTTTTGCAGAAGCTGGCACTGTCGTCTCTGTTGAGATAGTGTATGATCGAGTTACAGACAGGAGCAGAGGATTTGCATTTGTTACAATGAAAAGTGTTGAAGAAGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGAGTGCTAAGGTAAACTTTCCAGAAGTGCCAAAAGGAGGTGAAAGTTTAGTAATGAGACAAAAAGTAAGGAACAGCTACAAAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGCTGGGGACTGAACTCTCAGGATCTTAGAGATGCCTTTGCTGAACAGCCAGGCTTATTGGGTGCCAGGGTCATCTATGAGAGGGACAGTGGAAGATCTCGGGGTTTTGGGTTTGTCACTTTTGAAACTGCTGAGCATTTAGAGGCTGCTTTAAGCGCGATGAACGGTGTGGAGGTTCAAGGTCGACCGTTGCGATTGAATTTGGCTGAAAATACAAAAAACAATGTTGATAGCTCGGAATTGGTGTCAAGCGCCAGTGCTTGA 960 0.4417 MASIASVSSSIFNRINNLSFTHSSISLTTTNFPQRPISHKPLNLTLKSQSFTLSPLPLQSFHPPFAAADEFEASQDTTVSQQEEPETELESEAEPESETEPETLDKPKQEEEQKVTTSDDDGRLFVGNLPFSITSSQLAEIFAEAGTVVSVEIVYDRVTDRSRGFAFVTMKSVEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGESLVMRQKVRNSYKGFVDSPHKIYAGNLGWGLNSQDLRDAFAEQPGLLGARVIYERDSGRSRGFGFVTFETAEHLEAALSAMNGVEVQGRPLRLNLAENTKNNVDSSELVSSASA* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4479 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Mal3g4479 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 192 IPR000504 GO:0003723
Mal3g4479 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 297 IPR000504 GO:0003723
Mal3g4479 319 SUPERFAMILY RNA-binding domain, RBD 222 306 IPR035979 GO:0003676
Mal3g4479 319 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 4 308 - -
Mal3g4479 319 MobiDBLite consensus disorder prediction 83 99 - -
Mal3g4479 319 MobiDBLite consensus disorder prediction 100 119 - -
Mal3g4479 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 303 IPR000504 GO:0003723
Mal3g4479 319 PANTHER OS02G0815200 PROTEIN 4 308 - -
Mal3g4479 319 MobiDBLite consensus disorder prediction 72 121 - -
Mal3g4479 319 SMART rrm1_1 123 196 IPR000504 GO:0003723
Mal3g4479 319 SMART rrm1_1 226 299 IPR000504 GO:0003723
Mal3g4479 319 Gene3D - 205 311 IPR012677 -
Mal3g4479 319 Gene3D - 66 204 IPR012677 -
Mal3g4479 319 SUPERFAMILY RNA-binding domain, RBD 118 198 IPR035979 GO:0003676
Mal3g4479 319 CDD RRM_HP0827_like 123 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4479 Mal-Chr3 124634391 124636152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4479 109 308 Eukaryotic Initiation Factors Gene Family AT3G16380 29.902 1.43e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4479 - - gmx:100814852 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4479 3 124634391 124636152 Mal3g4479 3 124634391 124636152 ECH
Mal3g4479 3 124634391 124636152 Mal1g4625 1 108451424 108453728 PCT