Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4477 ATGAACGACTTACTCTCCGTCGATAACAACCACCACCACGTCATCCAGATGGCGGAAACCTCCACTGCACCGGCGCAAACCCTCGACAAATTCTTCGAAGAAGTGGAATCGCTAAAAGAACAACTAAAAGTGTTAGAAAAACTCCACACAAGCCTAAAAAACTCACACGAAAAAAGTAAAAGCCTTCACAGCGCACAAGCGGTGAAGCAGCTTCGTTCTACAATGGATTCTGACGTTACTCTTTCTCTCAAGAAAGCGAAACTGATTAAGGAGAGGTTGGAGTCACTTGACCGGTCTAATGAAGCGAGCCGGAGTTTGCCTGATTGTGGACCGGGTTCGTCTTCGGATCGAACCCGGTTGGGGGTGGTGAGTGGGTTGAGGAAGAATTTGAAGGATTCAATGGAGAGTTTTAATGGACTTAGGGAGCAGATATCGTCAGAGTATAGAGAGACGGTGCAACGGAGATATTTTGCTGTTAATGGAGAGAAGGCTGATGATAAAACTGTTGACCTCCTCATCTCTACAGGTGAGAGTGAAACATTTTTACAGAAAGCGATCCAAGAGCAAGGGAGAGCAACAGTTATGGAGACAATACAAGAGATTGAGGAGAGACATGGTGCAGTGAAAGAGATAGAGAGAAATCTAAAAGAGCTGCATCAAGTGTTTTTAGACATGGCAGTTTTGGTCCAAGCCCAAGGTCAAGAGTTGAATGACATTGAGATCCAAATGGCTAGAGCAAATTCGTATGTTAGGGGAGGCGTCCAACAATTACAAGTTGCTAGAAAGCATCAAAAGAATACCCGTAAATGGACATGTTTTGCAATTTTAATCCTCCTCATTATTGCTTTGGTTATAATCCTTCCTATAGTTTTAAAAAATAATTAG 885 0.4305 MNDLLSVDNNHHHVIQMAETSTAPAQTLDKFFEEVESLKEQLKVLEKLHTSLKNSHEKSKSLHSAQAVKQLRSTMDSDVTLSLKKAKLIKERLESLDRSNEASRSLPDCGPGSSSDRTRLGVVSGLRKNLKDSMESFNGLREQISSEYRETVQRRYFAVNGEKADDKTVDLLISTGESETFLQKAIQEQGRATVMETIQEIEERHGAVKEIERNLKELHQVFLDMAVLVQAQGQELNDIEIQMARANSYVRGGVQQLQVARKHQKNTRKWTCFAILILLIIALVIILPIVLKNN* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4477 294 Coils Coil 28 55 - -
Mal3g4477 294 PANTHER SYNTAXIN 8 288 IPR045242 -
Mal3g4477 294 SUPERFAMILY t-snare proteins 28 253 IPR010989 GO:0016020|GO:0016192
Mal3g4477 294 PANTHER SYNTAXIN-121 8 288 - -
Mal3g4477 294 CDD SNARE_syntaxin1-like 197 258 - -
Mal3g4477 294 Pfam Syntaxin 30 233 IPR006011 GO:0016020
Mal3g4477 294 Gene3D - 28 155 - -
Mal3g4477 294 MobiDBLite consensus disorder prediction 96 118 - -
Mal3g4477 294 CDD SynN 28 185 IPR006011 GO:0016020
Mal3g4477 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 198 260 IPR000727 -
Mal3g4477 294 SMART SynN_4 23 149 IPR006011 GO:0016020
Mal3g4477 294 SMART tSNARE_6 193 260 IPR000727 -
Mal3g4477 294 MobiDBLite consensus disorder prediction 102 118 - -
Mal3g4477 294 Pfam SNARE domain 236 286 IPR000727 -
Mal3g4477 294 Gene3D - 187 291 - -
Mal3g4477 294 ProSitePatterns Syntaxin / epimorphin family signature. 204 243 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4477 Mal-Chr3 124625225 124627359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4477 28 272 SNARE and Associated Proteins AT3G11820 69.388 1.73e-124 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4477 K08486 - gmx:100808718 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4477 3 124625225 124627359 Mal1g3412 1 57978049 57979870 PCT