Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4472 ATGGATCATGATGAGATCGAGGTTCCTTCATTCTTTGTCTGCCCTATATCATTAGAAATCATGAAGGATCCAGTAACAGTCTCAACAGGAATAACCTATGACAGAGAAAGTATTGAAAAATGGCTATTTGCGAAGAAAAACATGACATGTCCCGTTACAAAACAACAACTATCAGATTACACTGATTTAACACCAAACCACACTCTAAGAAGACTCATTCAAGCTTGGTGTACATTAAACGCTTCACAAGGCATTGAAAGGATTCCAACTCCAAAACCACCAATCAACAAAACCCAAATCACAAAACTCATCAAAGAAGCTTCTCATTCATCTATCACTGTGCAGCTTAAATGTCTGAAAAAACTTAGATCTATGGCTTCTGGAAGTGAAACAAATAAACGTTGCATAGAAGATGCAGGTGCTGTTCAGTTTTTAGCTTCTATTGTGATAAACAATAGTTGCAACATTGACTTTGCTAACACCTCTGCATCTTTATTAGAGACTAACCCTGTTGATGAAGCATTGAGCATACTTCACAATCTTCATGTATCTGAAGCTGGATTGAAGAATCTACTTACTTTCAAAAACGGCGAATTTATTGAGTCATTAACAAAAGTTATGCAGAAAGGGTTCTTTGAGTCAAGAGCTTATGCAGTTTTCTTATTAAAATCTATGTCAGAAGTAGCTGAACCAGTGCAATTACTACATCAAAAAATTGAGTTGTTCATTGAATTAGTACAAGTTTTGAAGGATCAAATATCACTGAAAGTATCAAAAGCAGCACTTCAGACACTGATTGCACTCTGTCCATGGGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTCCTGTTTTGGTAGAACTTCTGTTAGAAAATTGCAAAGATAGAAAACCAAATGAAATGATGTTGATCTTGTTGGAGAATCTTTGTCAGTGTGCTGAAGGAAGAGCTGAACTTTTGAGACATGCAGCAGGGCTTGCTGTTGTTTCTAAGAAGATTCTAAGGGTTTCGACCGTCGCAAACGATAGAGCTGTGAGGATTCTGTTATCTGTTTCAAGATTCTCTGCTACTCCTATTGTTGTTCAAGAAATGCTTAAACTTGGTGTTGTGGCTAAGCTTTGTTTGGTACTTCAAGTGGATTGTGGAAGTAAGACTAAAGAGAAAGCAAGGGAGATACTTAAGATGCATGCTAGGACATGGAGGAATTCTCCATGCATACCTAGTAGTTTGCTTTCTTCATACCCCAATTATGAGTGA 1263 0.3737 MDHDEIEVPSFFVCPISLEIMKDPVTVSTGITYDRESIEKWLFAKKNMTCPVTKQQLSDYTDLTPNHTLRRLIQAWCTLNASQGIERIPTPKPPINKTQITKLIKEASHSSITVQLKCLKKLRSMASGSETNKRCIEDAGAVQFLASIVINNSCNIDFANTSASLLETNPVDEALSILHNLHVSEAGLKNLLTFKNGEFIESLTKVMQKGFFESRAYAVFLLKSMSEVAEPVQLLHQKIELFIELVQVLKDQISLKVSKAALQTLIALCPWGRNRIKGVEAGTVPVLVELLLENCKDRKPNEMMLILLENLCQCAEGRAELLRHAAGLAVVSKKILRVSTVANDRAVRILLSVSRFSATPIVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARTWRNSPCIPSSLLSSYPNYE* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4472 420 Gene3D - 95 407 IPR011989 -
Mal3g4472 420 PANTHER WDSAM1 PROTEIN 4 417 IPR045185 GO:0061630
Mal3g4472 420 SUPERFAMILY ARM repeat 99 385 IPR016024 -
Mal3g4472 420 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Mal3g4472 420 SUPERFAMILY RING/U-box 4 81 - -
Mal3g4472 420 Pfam U-box domain 8 78 IPR003613 GO:0004842|GO:0016567
Mal3g4472 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Mal3g4472 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 417 - -
Mal3g4472 420 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Mal3g4472 420 CDD RING-Ubox_PUB 12 55 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4472 Mal-Chr3 124560596 124561858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4472 1 417 U-box Gene Family AT3G52450 58.145 2.86e-177 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4472 - - gmx:100811258 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4472 3 124560596 124561858 Mal3g4472 3 124560596 124561858 ECH
Mal3g4472 3 124560596 124561858 Mal1g3385 1 56955986 56957215 PCT
Mal1g3389 1 57098293 57099606 Mal3g4472 3 124560596 124561858 PCT