Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4419 ATGTCAATACAAGAAACAACATCGCTATGGTGGTCTCAACAACAACAACAAGAAGTAAAAACACCACAAGAGGAAGAAGGTGAACTAGAAGATGACATGGTTTTAGAATCAATAATGAAACTGAAAACAACAGAAGCATCAACAGAAGAAGAGAAAGAAGCGATGTTCGAGAAACCATTAACACCAAGCGACGTAGGGAAACTGAACAGACTTGTGATACCAAAACAACATGCTGAGAGATATTTCCCACTAGACTCAGAAGAAATCAAAGGCTTGTTACTGAGTTTTGAAGATGAATCAGGTAAGTGTTGGAGATTCCGTTACTCGTATTGGAACAGTAGCCAAAGTTATGTTCTTACAAAAGGTTGGAGTCGTTATGTTAAAGATAAGCGTCTTGATGCTGGTGATGTTGTTTTGTTTCAAAGACACCGTACACATCCTCAGAGATTGTTTATCTCATGGAGGCGCCGCCATGGTAGTAACTCTACTCCACCGGCGGCTCATGTTAGCAGATCCAGTACTGACGCCAATGGGAATATTGCTGTTCCTGTTGGGTGGTCCAGAGAACTCTATCCTGCGCATCCTTATCCTACGCATCATCATTCCTTGCCATACTATGCAGGTGGAGGGTCCCAAAGTCAGAACACAACCACACCTTGTGGAAATAGTTCGAGTACTTCCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAATATTAACAATATTAATGATTCCGAAACTTTGACACAAGATTGTTCTTATAATATGTCATCAACTCAAGGCACAGCTATCCCACAATTCTATCACCACCTCCACCGTCAACCTCCTTCAAACCCTCACCATCACATGCTACGTCAACAACCATATTAG 894 0.4172 MSIQETTSLWWSQQQQQEVKTPQEEEGELEDDMVLESIMKLKTTEASTEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEEIKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRTHPQRLFISWRRRHGSNSTPPAAHVSRSSTDANGNIAVPVGWSRELYPAHPYPTHHHSLPYYAGGGSQSQNTTTPCGNSSSTSRVLRLFGVNMECQPDNNININNINDSETLTQDCSYNMSSTQGTAIPQFYHHLHRQPPSNPHHHMLRQQPY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4419 297 Pfam B3 DNA binding domain 56 157 IPR003340 GO:0003677
Mal3g4419 297 MobiDBLite consensus disorder prediction 1 20 - -
Mal3g4419 297 ProSiteProfiles B3 DNA-binding domain profile. 56 158 IPR003340 GO:0003677
Mal3g4419 297 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 244 IPR044800 GO:0003700
Mal3g4419 297 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 12 244 - -
Mal3g4419 297 MobiDBLite consensus disorder prediction 207 225 - -
Mal3g4419 297 MobiDBLite consensus disorder prediction 204 225 - -
Mal3g4419 297 Gene3D - 44 167 IPR015300 -
Mal3g4419 297 CDD B3_DNA 55 145 IPR003340 GO:0003677
Mal3g4419 297 SUPERFAMILY DNA-binding pseudobarrel domain 53 158 IPR015300 -
Mal3g4419 297 SMART B3_2 56 158 IPR003340 GO:0003677
Mal3g4419 297 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4419 Mal-Chr3 123750499 123752963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4419 49 256 RAV Transcription Factor Family AT5G06250 50.901 2.67e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal3g4419 B3 1.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4419 - - cam:101494766 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4419 3 123750499 123752963 Mal3g4419 3 123750499 123752963 ECH
Mal3g4419 3 123750499 123752963 Mal1g3321 1 54732421 54734574 PCT