Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4396 ATGGATAATGATGACTGGGATTTATTTTCTATTGTGCGTAAGTGCAAAGCTACCACCTTCACTCATCCTTCCACCACTATCGAAAATATACCTCCAACCACAACCACAACCACTACCACCACCAACAATAGCATCATATCCCCTGAAAACACCACACCATCTTACTTTGATGATTTTACCTTTACCCAAGAAAATAGCTCAGTCCTTATTGCCCCACTTAAATCAAATGACTTCATAGAGCTAGAAAAATTGATAATCAACTCGAATTCCACCCCCATCATTCCCACCCTCACCACAACTATCCCTACCTCCAGTACCCCGACAACCATTACCAGCACCACCATCATCATCCCTACTACTATCACTAACACTAGTGTTCATGGATCTAATCAAAATTCCACCTTTTTTGATTTCCCAATACTCACTGAACAACAACATATGCAACCAAATTATCTCACTGAGCTAGAAAAATTTATACTAAACTTCACTCCTGCCGCTACTATCCCCACCCCAACCTTCACTACTCCTACCACCCCCACTGTTATTACTCCCATCACTACTACCACCACATTCACTACCCCCACACCCACAACCATTATCCACACATCAACCACCACCAACACCACCACACCTACCATGGCTAGTGCTCATGGAACCAATCAAAATACCACCTTTTCTGATTTCCCAATACTTATCGAACATCAACATATTCAACCAAATCAAAATAATCAAATGTCTGTTCTCAAACCTATTGCTTGCACTGAAGTCACAACCGCTCATTCTGACCATGCATACAACCATCCATCGGTTCCAAAGCAACATTCAAGATATCACAATCAATTACGAATTCTATTACCCCAAACTAGTTCTAGGGTTTTACCTGTTACACATCCACAAAAACTCAAATCAAGAAAAAGGAGTTACTACAAATGTAGCACTTCTGAAGATTGTTTAGCAAGAAAACAAGTAGAAAAAAGCAAAACTGAAGACAACACTTATGTTGTGACATATGTAGGAGTGCATAACCATGAAAAACCTAGATTACCAGCGGTTAGAGAAACTGGATCACCCTCGAACATTAGAAACATGGGTTCGCCTAATGTGGAGATGTTGCAATTTGATCATCCAAAGAATAACAATGCTCAAGTTCTCGTCGATCAATCAAAGATCCCTCATCTAGAAACGAAACTTATAGAGAGTCATTTACCTGTTGCTGGAGAATTCAAATCATCTCTAAATGTTGGAAACGTAGGTTCACCTAGAGGGACGATGCTACAATTTGATGAGTCTGAGACCAACAATGCTTATGTTTACGCTCATGATGATGACATTTTGATACCAAACATGACAGCTATGTCAGAGGATTTGTTACTAGACTTCAACCATCTCAATGGTGGCGCGTTATTCCCTTAG 1413 0.402 MDNDDWDLFSIVRKCKATTFTHPSTTIENIPPTTTTTTTTTNNSIISPENTTPSYFDDFTFTQENSSVLIAPLKSNDFIELEKLIINSNSTPIIPTLTTTIPTSSTPTTITSTTIIIPTTITNTSVHGSNQNSTFFDFPILTEQQHMQPNYLTELEKFILNFTPAATIPTPTFTTPTTPTVITPITTTTTFTTPTPTTIIHTSTTTNTTTPTMASAHGTNQNTTFSDFPILIEHQHIQPNQNNQMSVLKPIACTEVTTAHSDHAYNHPSVPKQHSRYHNQLRILLPQTSSRVLPVTHPQKLKSRKRSYYKCSTSEDCLARKQVEKSKTEDNTYVVTYVGVHNHEKPRLPAVRETGSPSNIRNMGSPNVEMLQFDHPKNNNAQVLVDQSKIPHLETKLIESHLPVAGEFKSSLNVGNVGSPRGTMLQFDESETNNAYVYAHDDDILIPNMTAMSEDLLLDFNHLNGGALFP* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4396 470 SMART WRKY_cls 298 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal3g4396 470 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 306 465 IPR044810 GO:0003700
Mal3g4396 470 SUPERFAMILY WRKY DNA-binding domain 304 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal3g4396 470 Pfam WRKY DNA -binding domain 303 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal3g4396 470 MobiDBLite consensus disorder prediction 23 49 - -
Mal3g4396 470 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 306 465 - -
Mal3g4396 470 Gene3D WRKY domain 295 347 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal3g4396 470 MobiDBLite consensus disorder prediction 170 220 - -
Mal3g4396 470 ProSiteProfiles WRKY domain profile. 306 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4396 Mal-Chr3 123504013 123506450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4396 306 346 WRKY Transcription Factor Family AT5G52830 56.098 3.68e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mal3g4396 WRKY 3.4e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4396 - K13425 mtr:MTR_6g053200 323.939