Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4389 ATGGATGCATTATGCCCTGCAGTCTTTGTCAATGCAGAACTGCTACCCTATTATGTTGGAAGAAGGGTTCGTACTGTGATGCAGGTTGTGCGATCTGACGCTATAACTGTCATTGGAAAATCACCTGATGAGAAGCAGTTGATTGTAAAAGGATCACCCCCACCCGCTCCTCTTACAAGTTTTGTAGAAGTTATTGGTATTGTTAACAGCGACAAGTCCATCAAAGCTGAGTTATGGACCAACTTTGGTGATGATATTGATATGTTCAGCTACCATAGGCTTTGTCAGCTTGCAAATGGAGAATTTAAACACTTGTTCATTTGA 324 0.4136 MDALCPAVFVNAELLPYYVGRRVRTVMQVVRSDAITVIGKSPDEKQLIVKGSPPPAPLTSFVEVIGIVNSDKSIKAELWTNFGDDIDMFSYHRLCQLANGEFKHLFI* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4389 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Mal3g4389 107 CDD RPA3 6 106 - -
Mal3g4389 107 SUPERFAMILY Nucleic acid-binding proteins 6 106 IPR012340 -
Mal3g4389 107 Pfam Replication factor A protein 3 7 103 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g4389 107 Gene3D - 5 107 IPR012340 -
Mal3g4389 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4389 Mal-Chr3 123450497 123450987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4389 1 107 Core DNA Replication Machinery Family AT4G18590 59.813 1.22e-46 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4389 K10740 - gmx:100306641 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4389 3 123450497 123450987 Mal3g4389 3 123450497 123450987 ECH
Mal3g4389 3 123450497 123450987 Mal1g2338 1 31144697 31156184 PCT