Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4388 ATGCCCGTGACAAGACAAAAAGATGCAACAGCCCAAAATTCAGAGTCACCAGGGGGAAACAGTGAACCTGAAAAATCCACAGATTCTGGTGAGCAGGTAGATCTTGACGGGGACAATGATCCAGAGGAGTTAAGCGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGTGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAGGAGGAAGAAGAAATAGAGGAAGAGAGTAAGCCCTCGGATGATGAAGATGAGGTTGAGAAAAAGAAACACACCGAGCTTCTTGCGCTTCCGCCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCATGAAACTTCTGAAAAAGATTTAAGGGTCTTTTGTCAATCTGTGGGAGAAGTGGCAGAGGTAAGGGTTATGAAGGGGAAAGAATCTAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTGAGGAGTTGAACAACTCTGAATTTGAGGGAAGAAAAGTAAAGTGCTCACCATCTCAAGTTAAGCATCGGTTATTCATTGGTAATGTTCCTAAAGAGTGGACTGTAGAAGATATGAAGAAGGTTGTTGCCAAGGTTGGCCCTGGAGTCATTTCTGTGGAACTGTTGAAGGATCCACAGAGTTCTAGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCAAAATTTAAACTTGACAATAACGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCAGCATCCTCTCAGGTGAAAGCAGTATATGTAAAGAACCTTCCAGAAAACATAACTCAGGATAGACTGAAGGAGATTTTTGAACATCATGGAAAGATCACAAAAGTGGCTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGCAGATATGGTTTTGTGCACTTTGCTGATAGGTCAAGTGCAATGAAGGCATTGAAGAATACGGAGAAGTATGAAATTGATGGCCAAACTTTGGAATGCTCACTCGCTAAGCCACAGGCAGATCAGAAGTCATCTGGTGCATCAAATTTACACAATTCAACTGTACTTCCTACGTATCCACCTCCTCTTGGTTATGGTATGGTTGGAGGTGGGTATGGTGCTGTTGGTGCAGGATATGGTGCTGCTGGCTTTGCACCGCCACTGATGTATGGTCCGGGATCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCGGATGGAAGGATTGCATATGTATTGCAACAGCCAGGTTTGCAGCAATCACGTTTTCAACAGCCAGGTTTTCAACAGCATGCTCCTTCACCAGTATCCCGACATGGTAGGAGTAGTGGTGGTAGCTCAAATGGTGAAAAACGCAGTAACGATAACAACCGTAATCGTGGTCATGGCCGATATAATCCCTACTAA 1446 0.4419 MPVTRQKDATAQNSESPGGNSEPEKSTDSGEQVDLDGDNDPEELSEEEVEYEEVEVEEEVEEEEEEEEEEIEEESKPSDDEDEVEKKKHTELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKESKGYAFVTFKTKELASKAIEELNNSEFEGRKVKCSPSQVKHRLFIGNVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSKFKLDNNAPTVSWADPRNSESSASSQVKAVYVKNLPENITQDRLKEIFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGASNLHNSTVLPTYPPPLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGSTPAGMAMMPMLLPDGRIAYVLQQPGLQQSRFQQPGFQQHAPSPVSRHGRSSGGSSNGEKRSNDNNRNRGHGRYNPY* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4388 481 PANTHER - 13 479 - -
Mal3g4388 481 Gene3D - 260 391 IPR012677 -
Mal3g4388 481 MobiDBLite consensus disorder prediction 33 79 - -
Mal3g4388 481 SMART rrm1_1 272 345 IPR000504 GO:0003723
Mal3g4388 481 SMART rrm1_1 178 255 IPR000504 GO:0003723
Mal3g4388 481 SMART rrm1_1 101 171 IPR000504 GO:0003723
Mal3g4388 481 MobiDBLite consensus disorder prediction 435 481 - -
Mal3g4388 481 Coils Coil 44 76 - -
Mal3g4388 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 169 IPR000504 GO:0003723
Mal3g4388 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 246 IPR000504 GO:0003723
Mal3g4388 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 342 IPR000504 GO:0003723
Mal3g4388 481 SUPERFAMILY RNA-binding domain, RBD 267 356 IPR035979 GO:0003676
Mal3g4388 481 Gene3D - 21 177 IPR012677 -
Mal3g4388 481 Gene3D - 178 258 IPR012677 -
Mal3g4388 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 349 IPR000504 GO:0003723
Mal3g4388 481 SMART rrm2_1 101 171 IPR003954 GO:0003676
Mal3g4388 481 MobiDBLite consensus disorder prediction 435 465 - -
Mal3g4388 481 MobiDBLite consensus disorder prediction 1 26 - -
Mal3g4388 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 175 IPR000504 GO:0003723
Mal3g4388 481 SUPERFAMILY RNA-binding domain, RBD 97 260 IPR035979 GO:0003676
Mal3g4388 481 MobiDBLite consensus disorder prediction 1 91 - -
Mal3g4388 481 PANTHER GEO13361P1-RELATED 13 479 - -
Mal3g4388 481 CDD RRM_SF 102 171 - -
Mal3g4388 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 259 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4388 Mal-Chr3 123442436 123447210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4388 102 416 Eukaryotic Initiation Factors Gene Family AT4G34110 23.925 2.05e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4388 K13161 - gmx:100798476 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4388 3 123442436 123447210 Mal3g4388 3 123442436 123447210 ECH