Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4330 ATGAACATGGACAACACGCGTAGATCGTTGGATAGATCCAGAGAACCCGGTGCGAAGAAACCTCGTTTGGTTGATGAGCTTCAACAAGGTTCGAATCCAACCTCACGACCGTTTCCTCAACGGCAACAACCTGGTTCTGGGGTTGCTACGATGTTGTCTTCTGGTAGGTTTCGAATGAACGACAGAGACTCTGAAAGTAGTGATGGTGGCGGTGGTTACCACCCTCAGCCACCGCCGCATCAAGAGCTTGTGACTCAGTATAAGGCTGCTCTTGCTGAGCTTACTTTCAATTCGAAGCCGATAATTACCAATTTGACTATAATTGCTGGAGAGAATCTTTCTGCGGCGAAATCGATTGCTGGAGCTGTTTGTGCTAATATTCTTGAGGTTCCAAGTGATCAGAAGCTACCATCGCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGTCAGACTACCTGAGGTATTCTGCAATACATACAGACAGGTTGATCCTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAGATAATTGAGAAGGAACTCAACTTCACTCCCGCGGTCAATGGTTCAGCTTCTGCATCTGCTACACTTAGAAGTGATTCTCAGTCTCAACGGCCACCTCATAGCATCCACGTGAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTATTTGATGATATGACTGGAGTTATTTCAAACGCAAATGAGGACTCGGAGAGGCCAGATCGAGCTTTGGGTGCTGCACGACCATGGCTGGATCCTAGGATTAACATGCATAATAATCAGCATACTCATAGAGGTGCATTGAATGACTCTGTTCCTGAAAAGAGCATTGGCGGAGCCTATGGAGACGATGAATATAATTCCAGCGTTTCAAATAATTTGGGCTCAAGTGTTGGAAGAACTGGAAGTAGGCTCGTTGGTGGTGTTGGAGAGACCTTATCCGGGCAAAGAAATGGTTTCAGCCTCAAACATGGTTTTTCAAATCATGAAGCTCCGAAGCCTGTGAATTTGGATGCACATAACATAAGGAGCAATGTGATATCAAGGAACTGGAAAAATTCGGAGGAAGAGGAGTTCATGTGGGATGATATGAACTCTGGTTTACCCAATAATGTACCTAATGTCTCTAGCAATTTGAGCTCAGACCCATGGATGGCCGATGACGACAATTTGGAAAGTGAAGATCACCTCCAAATCACACACCCAATTGGAACAAAGGTTGTTAAAGGAATATCCACTGTTAAGAAACAACTACCATCATCTGGGGGGCATTCATCATTATCATGGGAGTTGCAGAAGCAGCTCCCAAGTGCCAAATTGAATATGAAGCCAGGTCACTCTGAAATATTTGTTTCTGCTCCTAGTGGCTTACCCAAGAATTCAAATTCTTCGGCTGTGAGGATGAGGAATCAGTCTTCTATGCCGCATACAACAATAGGAATGACCAAAATTACGGGACAGCAGCAATATGATTCTGAGGGGGCCGAATCCCCTTCTGAACAGTCGTCACCTTTGCGACAACAGTCTCCATCAGTGCCAGTAACAATGCGCCACCCTCCTTCAGTGCGAAATTTGGCTGAGCAAGATTGTCCACCAACTCTTAAAGCATCTCAACATTTGGGTGGTCTGCAAAGTCAATATATTAGAGATCCCGTACCTGGCAATCGTTCCAATGTTCAGGTTGGTAACTTGCGAAGATCACAAGAAAAGGACATGCGGGGTCCGTTATCTTCTGTAACTTCTTTTCACCCAAAACCTCAGCAACAGCAGCTGGGCCCTTCACAGGCTGAAGTTACTTTTAAAGCCAAGCAGCCACTAAAGTCTAAAGTTCCTTTAGCCAAAGCCAAAGTAGCTTCAGAAAAGTCCACCACAAAAAGTCTTCCAGCTCCATCTGTGAAGAGTGGAGTCATCCCCAATAAATCAATTACCAGAAGTCTGGATGCAAGTAATCGTCCATCTCAAACAGGGGTTAAGCCTACTCGGTCAGGTGGTCCTTCCCTTACAACATTAATTTCTTCGGGGTCTTCTTCCGTGTCATTAGGTTCTCCAAAGGAATATTCGCCTACTCTGCCAAAACTACCTCATGGGAAGGCTGGAAAGAAGCAAAATGATTCTACTCAACCATCTACTTCCTCTAACGATCGCGGTGCATCAGCTCCGAGCTCAAATACTGCCAATAAGAATACCTTGAATCCATTTTCAAATCTATTAACCTCATTGGTTGCGAAAGGTTTGATATCCGCAGGAACAGAGTCAGCCACTGTAGTGCCAAGTGAGATGCGATCAAAAGACAAAACTGAAAGCATTACTGCCAACTCCTCTTTACCAGTTGCTTCAGTTCCTGATCCTGCAGCTGTCCCAGTAAAATCTTCCCGAGTTGAGGCTGATGATGCTGCAAAGACCTCGCTTGCCTCTTCTCAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTAATCACAGAATTATTTGATGAACTCCCACATCATTGCAGTAATTGTGGTATTAGGCTTAAACAGCAAGAACAGTTTGATAGACACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAATGGTCTGATTGTAGCATCAAGAAGATGGTATGCAACATCAAATGACTGGATTGCTGGCAAGATCGAATGTCTGTCCGAGTCTGAGTTTACTGATTCTGTAGATGAATATGATGATGAAAAAACAGATGGGAGTCAATTGGATTCTATGGTCATAGCAGATGAAAACCAGTGCTTGTGTGTGTTGTGTGGTGAGCTATTTGAAGATGTATACTGTCAGGAAAGGCACCAGTGGATGTTTAAGGGGGCTGTATACCTGAACAATTCAGATAGCGATAGCGAGATGGAAAGTAGAAATGTCGGCCCCATCATTCATGCTAGATGCTTGTCAGAGAACTCAATACTTGGTGTGATCAATACAGAGCATGATTAA 3081 0.4388 MNMDNTRRSLDRSREPGAKKPRLVDELQQGSNPTSRPFPQRQQPGSGVATMLSSGRFRMNDRDSESSDGGGGYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCNTYRQVDPPVHSSMRHLFGTWRGVFPPQTLQIIEKELNFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVFDDMTGVISNANEDSERPDRALGAARPWLDPRINMHNNQHTHRGALNDSVPEKSIGGAYGDDEYNSSVSNNLGSSVGRTGSRLVGGVGETLSGQRNGFSLKHGFSNHEAPKPVNLDAHNIRSNVISRNWKNSEEEEFMWDDMNSGLPNNVPNVSSNLSSDPWMADDDNLESEDHLQITHPIGTKVVKGISTVKKQLPSSGGHSSLSWELQKQLPSAKLNMKPGHSEIFVSAPSGLPKNSNSSAVRMRNQSSMPHTTIGMTKITGQQQYDSEGAESPSEQSSPLRQQSPSVPVTMRHPPSVRNLAEQDCPPTLKASQHLGGLQSQYIRDPVPGNRSNVQVGNLRRSQEKDMRGPLSSVTSFHPKPQQQQLGPSQAEVTFKAKQPLKSKVPLAKAKVASEKSTTKSLPAPSVKSGVIPNKSITRSLDASNRPSQTGVKPTRSGGPSLTTLISSGSSSVSLGSPKEYSPTLPKLPHGKAGKKQNDSTQPSTSSNDRGASAPSSNTANKNTLNPFSNLLTSLVAKGLISAGTESATVVPSEMRSKDKTESITANSSLPVASVPDPAAVPVKSSRVEADDAAKTSLASSQSTSTEIRNLIGFDFKPDVIREMHPHVITELFDELPHHCSNCGIRLKQQEQFDRHLEWHATKEREQNGLIVASRRWYATSNDWIAGKIECLSESEFTDSVDEYDDEKTDGSQLDSMVIADENQCLCVLCGELFEDVYCQERHQWMFKGAVYLNNSDSDSEMESRNVGPIIHARCLSENSILGVINTEHD* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4330 1026 MobiDBLite consensus disorder prediction 27 50 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 782 814 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 290 326 - -
Mal3g4330 1026 SMART 558neu5 82 204 IPR006569 -
Mal3g4330 1026 CDD CID_Pcf11 84 204 - -
Mal3g4330 1026 Pfam CID domain 88 197 IPR006569 -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 1 80 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 731 761 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 482 550 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 577 761 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 577 596 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 214 257 - -
Mal3g4330 1026 Gene3D - 76 204 IPR008942 -
Mal3g4330 1026 ProSiteProfiles CID domain profile. 79 207 IPR006569 -
Mal3g4330 1026 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1023 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mal3g4330 1026 MobiDBLite consensus disorder prediction 611 628 - -
Mal3g4330 1026 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1023 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 485 546 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 819 838 - -
Mal3g4330 1026 ProSitePatterns Zinc finger C2H2 type domain signature. 876 896 IPR013087 -
Mal3g4330 1026 SUPERFAMILY ENTH/VHS domain 79 205 IPR008942 -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 1 22 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 650 715 - -
Mal3g4330 1026 MobiDBLite consensus disorder prediction 214 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4330 Mal-Chr3 122701160 122706961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4330 21 399 C2H2 Transcription Factor Family AT4G04885 37.594 1.44e-57 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g4330 CID 4.5e-12 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4330 3 122701160 122706961 Mal3g4330 3 122701160 122706961 ECH
Mal3g4330 3 122701160 122706961 Mal1g3229 1 51162311 51168289 PCT