LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal3g4315	ATGCAATGGTTTAACAAAGAAACCATGGTATATCCTTCACAAAATATTCTTCTCATTATTGTTCTACTCCTGTCTTTCCCTGTTTTCCTCTTCCTCCTCAACCGCCGCGCCAAAACCTCGGCCACCAAGCGCCGCCTTCCACCGGGACCACTAGGATGGCCCATATTTGGAAACATGTTCCAATTGGGAGAAATGCCTCACCGTACACTCACAAACTTAAGGCAAAAATATGGTCCAATTTTATGGCTCAAAATAGGTGCTATAAACACTATGGCAATACTCTCAGCCAAAGAAGCCACAATATTTTTCAAAAACCACGACCACAATTTTTCAGACCGAACCGTAATTGAAACCATGCGTGTCCATAATTACGACAAATCATCCTTAGCTTTGGCGCCTTACGGCACCTATTGGCGGCTCATGCGCCGCCTTGTAACCGTTGATATGTTGGTCATGAAACGCATAAACGACACAGCTTCTATTCGTCGTAGATGTGTAAACGACATGCTAGCATGGGTTGCTAAAGAAGCACGTGAGTTAAGAGATGGTCGTGGTCTTCACGTGTCACGTTTTGTTTTCTTCATGAGTTTTAACTTGTTTGGGAATTTAATGTTGTCTCGTGATATATTTGATATGGAATCTGAGAAAGGTTCCGAGTTTTTCACGGCGGTTATGGGGTTGTTGGAGTGGACCGGACATGCTAATGTGGCGGATTTGTTTCCTTGGTTAAGGTGGTTGGATCCACAAGGTCTTAGGAGAAAAATGGATAGGGATATGGGAAAAGCTATTGAAATTGCTTCAACGTTTGTGAAAGAGCGTTTGGATTTGGAAGTGGAGCGTGATGAGAAATCAAGAGACTTCTTGGATGTTTTGCTTGAGTTTCAAAGAAATGAGAACCAAGATGCAGTCAACATCTCAGATAAAGATCTCAACGTTTTCATCTTGGAAATATTCTTGGCTGGTTCAGAAACAACTAGCAGCACAATTGAATGGGCTATGACAGAGCTTTTATGCAACCGTGAGTGTATGTTGAAAGTAAAAAAGGAGCTTAGTTCAGTAATTGGGGTCAAAGATGTTGAAGAGAGTGACATAGACAAACTTCCATACCTACAAGGCATAGTCAAAGAAACACTAAGGTTACATCCTCCAATTCCACTACTTGTCCCACGAAAAGCAACACAAGACACAGAATTCATGGGATACTTCGTACCAAAAGACACACAAGTATTTGTGAACACATGGGCAATTGGTAGAGACCCAGATGTTTGGGATGAACCATTGGTTTTTAAACCTGAGAGATTTTGTGATGTCAATAATAAGAGTTATAAGACTGATTATAAAGGACAACATTATGAGTTTATACCATTTGGTGCTGGAAGAAGAATGTGTGCTGGTGTGCCTTTGGCTCATAGAATTCTTCACCTTGTTTTGGGATCTTTGCTTCATCGATTTGATTGGGAGCTTGATTGCAATGTTACACCGTTAACTATGGACATGAAAGATAGGCTTGGGATTACCATGAGAAAGTTTCAACCATTGCTTGCTGTGCCTAAATTAGTTGGTTCTTAG	1569	0.4117	MQWFNKETMVYPSQNILLIIVLLLSFPVFLFLLNRRAKTSATKRRLPPGPLGWPIFGNMFQLGEMPHRTLTNLRQKYGPILWLKIGAINTMAILSAKEATIFFKNHDHNFSDRTVIETMRVHNYDKSSLALAPYGTYWRLMRRLVTVDMLVMKRINDTASIRRRCVNDMLAWVAKEARELRDGRGLHVSRFVFFMSFNLFGNLMLSRDIFDMESEKGSEFFTAVMGLLEWTGHANVADLFPWLRWLDPQGLRRKMDRDMGKAIEIASTFVKERLDLEVERDEKSRDFLDVLLEFQRNENQDAVNISDKDLNVFILEIFLAGSETTSSTIEWAMTELLCNRECMLKVKKELSSVIGVKDVEESDIDKLPYLQGIVKETLRLHPPIPLLVPRKATQDTEFMGYFVPKDTQVFVNTWAIGRDPDVWDEPLVFKPERFCDVNNKSYKTDYKGQHYEFIPFGAGRRMCAGVPLAHRILHLVLGSLLHRFDWELDCNVTPLTMDMKDRLGITMRKFQPLLAVPKLVGS*	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal3g4315	522	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	456	465	IPR017972	GO:0005506\|GO:0016705
	Mal3g4315	522	Gene3D	Cytochrome P450	31	514	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	P450 superfamily signature	463	474	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	P450 superfamily signature	454	463	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	P450 superfamily signature	320	337	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	P450 superfamily signature	372	383	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PANTHER	CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED	17	520	-	-
	Mal3g4315	522	SUPERFAMILY	Cytochrome P450	47	516	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	Pfam	Cytochrome P450	47	507	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	E-class P450 group I signature	309	326	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	E-class P450 group I signature	74	93	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	E-class P450 group I signature	371	389	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	E-class P450 group I signature	412	436	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	E-class P450 group I signature	453	463	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	E-class P450 group I signature	463	486	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PRINTS	E-class P450 group I signature	329	355	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal3g4315	522	PANTHER	CYTOCHROME P450 FAMILY PROTEIN	17	520	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal3g4315	Mal-Chr3	122521306	122523002	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal3g4315	39	517	Cytochrome P450	AT3G52970	43.888	9.59e-143	419

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal3g4315	3	122521306	122523002	Mal3g4315	3	122521306	122523002	ECH