Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4310 ATGGATTGGAATGAGAGCACAAGATCCTTTGTTCCTCATGCAGAGTCTTCCTTAAGTTTCTTCTACAACTATAACAACACCCCTTATTCAGGAATGGAAGTGAGTCAAGCAGCATTGGGTGAGACACAACAAAGGATACTTCCAGCTATGGATGAAATGAACATTAATGGAAACAATTACAGAGATAAGAAGAAGAGATTAACAAGTAACCAGATTGATTCACTGGAGAGAAGTTTCCAAGAAGAAATAAAGTTAGACCCTGAAAGGAAGATGAAGCTTTCAAGAGAGTTAGGGCTCCAACCTCGCCAAATCGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAAGCTAAACAGCTTGAACACTTGTATGATGTGCTTAAACAAGAATTTGATGTCGTCTCCAAGGAAAAACAGAAACTTCAAGAAGAGGTTATGAAGTTGAAGGGAAAGCTAAAAGAGCAATCAGGTAATTTTAGGACACAAACATATGTTGAAGAAACAGTAGAAAGCACATCAGAAGGTCTACCAACAAGTACTAGCATTCAACAAACTGCTGCAGATCAGGGATACAACAACGACAACAGTACTTCTTTCATTGTTGAAGATTTTAATAACTCTATTTCAATGCCTCCTCATCAATCTCACTGGCCTCTATTGCCTAATTATTATCCCTAA 678 0.3835 MDWNESTRSFVPHAESSLSFFYNYNNTPYSGMEVSQAALGETQQRILPAMDEMNINGNNYRDKKKRLTSNQIDSLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKQEFDVVSKEKQKLQEEVMKLKGKLKEQSGNFRTQTYVEETVESTSEGLPTSTSIQQTAADQGYNNDNSTSFIVEDFNNSISMPPHQSHWPLLPNYYP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4310 225 CDD homeodomain 61 119 IPR001356 GO:0003677
Mal3g4310 225 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 219 - -
Mal3g4310 225 SMART HOX_1 61 122 IPR001356 GO:0003677
Mal3g4310 225 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Mal3g4310 225 Pfam Homeobox associated leucine zipper 118 152 IPR003106 GO:0006355|GO:0043565
Mal3g4310 225 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Mal3g4310 225 SUPERFAMILY Homeodomain-like 50 120 IPR009057 -
Mal3g4310 225 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Mal3g4310 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 219 IPR045224 GO:0003700
Mal3g4310 225 Gene3D - 60 123 - -
Mal3g4310 225 Coils Coil 117 158 - -
Mal3g4310 225 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Mal3g4310 225 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4310 Mal-Chr3 122469399 122471784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4310 16 148 Homeobox Transcription Factor Family AT5G03790 59.574 7.89e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal3g4310 Homeodomain 7.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4310 - - gmx:100807872 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4310 3 122469399 122471784 Mal3g4310 3 122469399 122471784 ECH
Mal1g3195 1 49170477 49172477 Mal3g4310 3 122469399 122471784 PCT