Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4291 ATGGCGGTTCCTCCCTCGGTCGCCGCCACTCCGGCTTCTCTTTACGTCGGCGACCTCCATCCCGACCTCTCCGACTCTCAACTTCACGATGCTTTCTCCGATTTCAAAACTCTCGCTTCTGTTCGCATTTGCAGAGACTCTTCCACCGGCAAATCACTCTGTTATGGCTACGTCAACTTCCTCTCTCCTCAAGACGCAATTCGTGCGATTGAGGTCAAGAATCATTCTACATTGAATGGAAAAGCGATAAGGGTAATGTGGTCGCGACGTGATCCTGATGCAAGGAAAAATTGTATAGGGAACGTGTTTGTTAAGAATTTAGCTGAATCAATAGATAACTGTGGACTAGAAGATATGTTTAAAACGTTTGGGAATATTTTGTCAAGCAAAGTTGTAATGTCTGAGGATGGGAAAAGTAAAGGATATGGCTTTGTTCAATTTGAAACAGAGGAATCTGCAAATGCTGCTATTCACAAGTTGAATGGCTATACTGTTGATGATAAACAACTATATGTTGGGAAGTTTGTCAAGAAAAGTGACCGTGTAACGTCTGGCGCTGATACTAGATATACAAATTTGTACATGAAGAATTTGGACCTAGATATTACAGAGACACTTTTGAAGGAAAAGTTTTCGTCTTTTGGGAAAATCATTAGCTTGGCTGTTGCAAAGGACAGCAATGGGATGTCAAAGGGTTTTGGATTTGTGAATTTTGAAAAGCCAGATGATGCTAAAAGGGCAATGGAAGCAATGAATGGATTGCAACTAGGTTCAAAGATTCTGTATGTAGCCAGGGCACAGAAGAAGGCTGAGCGCGAGCAGATCTTGCACCAGCAATTCGAAGAGAAACGAAAGGAACAAGTCTTGAAATATAAGGGGTCAAACATTTATGTGAAGAATATTGATGACAATGTTAGTGATGAAGGACTGAGAGATCACTTCAGTGTATGTGGCAATATAACTTCTGCAAAGATTATGCGAGATGACAAAGGGATAAGCAAAGGATTTGGTTTCGTGTGCTTCTCCACTCCTGAGGAGGCTAATAAAGCTGTGAACACTTTTCATGGATTCATGTTCCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGACAGACAGGCACAGTTGCAGCTCCAGTATGCACAGCAAATTGCAGGGCCTTCAACTGCCATTGTCCCTGGTGGATATCCTCCTTTCTACTACACAGCTACTGGTGTAGTGTCACACGCGCCTCCTCGGGCTGGGCTCATGTATCAGCCTATGGCATTGGGTCCAGGATGGAGGGCTAATGGGTCTGCACCTCCTGCTAGATCATTCCAACAGTCACCCACACCTGTTGTTTCTAACAATACTAGGCAGCATAGGCAAAATAGGGGCAGGATGAATGGCCATGCAGTATCACAGGGAAATACTCACTCTGGTACATATATGCCACAAGCCCAGCAGGCTTCTCAGCCAGCAATCTCTTCAAGAGAGTCAAGTACTCAGCAGAGAACCGGACAAGCTAAGTATGTACCTAGTGGACGCCACCGCGAGATGGAAAAAGGATCTGGATTATCATCTGGTGGTTCAAACTCTGGTGGAGGCTCTCAGGGACCGGAAGTGCTGCATATCATGCTTGCTAATGCTACTCCAGAGCAGCAGAAAGAGATACTTGGCGAGCATCTATACATGCTTGTCCAGAAACTCAAGCCTAACCTAGCAGCAAAGATTACTGGGATGCTTTTGGAGATGGACAATGCTGAATTGCTGGTTCTCATGGAATCACCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTTTCCAAGTGCTGAAGAACTCTAAAGCTAAAGTTTCTGGTCAGGATGTACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCAGTGAACTAA 1899 0.4444 MAVPPSVAATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSTGKSLCYGYVNFLSPQDAIRAIEVKNHSTLNGKAIRVMWSRRDPDARKNCIGNVFVKNLAESIDNCGLEDMFKTFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIHKLNGYTVDDKQLYVGKFVKKSDRVTSGADTRYTNLYMKNLDLDITETLLKEKFSSFGKIISLAVAKDSNGMSKGFGFVNFEKPDDAKRAMEAMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGNITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQQIAGPSTAIVPGGYPPFYYTATGVVSHAPPRAGLMYQPMALGPGWRANGSAPPARSFQQSPTPVVSNNTRQHRQNRGRMNGHAVSQGNTHSGTYMPQAQQASQPAISSRESSTQQRTGQAKYVPSGRHREMEKGSGLSSGGSNSGGGSQGPEVLHIMLANATPEQQKEILGEHLYMLVQKLKPNLAAKITGMLLEMDNAELLVLMESPESLSAKVEEAFQVLKNSKAKVSGQDVLHSNFLSAEVAVN* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4291 632 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 535 612 IPR002004 GO:0003723
Mal3g4291 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Mal3g4291 632 SUPERFAMILY PABC (PABP) domain 539 619 IPR036053 GO:0003723
Mal3g4291 632 SMART rrm1_1 192 264 IPR000504 GO:0003723
Mal3g4291 632 SMART rrm1_1 101 173 IPR000504 GO:0003723
Mal3g4291 632 SMART rrm1_1 13 86 IPR000504 GO:0003723
Mal3g4291 632 SMART rrm1_1 295 367 IPR000504 GO:0003723
Mal3g4291 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Mal3g4291 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Mal3g4291 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Mal3g4291 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Mal3g4291 632 PANTHER POLYADENYLATE-BINDING PROTEIN 527 617 - -
Mal3g4291 632 PANTHER POLYADENYLATE-BINDING PROTEIN 5 507 - -
Mal3g4291 632 SUPERFAMILY RNA-binding domain, RBD 290 383 IPR035979 GO:0003676
Mal3g4291 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Mal3g4291 632 Coils Coil 263 283 - -
Mal3g4291 632 CDD RRM2_I_PABPs 99 174 IPR045305 -
Mal3g4291 632 SMART poly_2 547 610 IPR002004 GO:0003723
Mal3g4291 632 CDD RRM4_I_PABPs 293 371 - -
Mal3g4291 632 SMART rrm2_1 192 264 IPR003954 GO:0003676
Mal3g4291 632 SMART rrm2_1 295 367 IPR003954 GO:0003676
Mal3g4291 632 SMART rrm2_1 101 173 IPR003954 GO:0003676
Mal3g4291 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Mal3g4291 632 MobiDBLite consensus disorder prediction 437 506 - -
Mal3g4291 632 SUPERFAMILY RNA-binding domain, RBD 5 93 IPR035979 GO:0003676
Mal3g4291 632 Gene3D - 94 180 IPR012677 -
Mal3g4291 632 MobiDBLite consensus disorder prediction 431 536 - -
Mal3g4291 632 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
Mal3g4291 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Mal3g4291 632 PANTHER RNA BINDING PROTEIN 527 617 - -
Mal3g4291 632 PANTHER RNA BINDING PROTEIN 5 507 - -
Mal3g4291 632 Gene3D - 535 626 - -
Mal3g4291 632 Gene3D - 2 93 IPR012677 -
Mal3g4291 632 CDD RRM1_I_PABPs 13 92 - -
Mal3g4291 632 Pfam Poly-adenylate binding protein, unique domain 542 607 IPR002004 GO:0003723
Mal3g4291 632 Gene3D - 276 382 IPR012677 -
Mal3g4291 632 Gene3D - 181 275 IPR012677 -
Mal3g4291 632 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 608 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4291 Mal-Chr3 122215769 122219902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4291 12 630 Eukaryotic Initiation Factors Gene Family AT2G36660 53.110 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4291 K13126 - gmx:100779547 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4291 3 122215769 122219902 Mal3g4291 3 122215769 122219902 ECH
Mal3g4291 3 122215769 122219902 Mal1g3172 1 49008605 49012371 PCT