Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4280 ATGGACGCACGGAAAATTTCTATGGTGAATGGTTACATTGTTTACACTCGACTCAAGAGGTCTCTCAATTCGTCTAATAATTTTTCCGAGGAAGTTGATTGCAAGAGATTCAAGGAAGATGCCGAGGTGAAGACTGTGTCTCGTGAGGTTCCGGTGACGGCAACGGCGACGTTTAAGAGGATTACGAGATCGGCGACGAAAGCGAACGTTGGTTCCGGTGAGGAAACGGTTACCGTAGTAGAACAAAAAGGTGAAGGTGATGATGCTGTTGCAATTGGTAGAGGTGATGATAAGGTTCCGGTGAGGAATTTCAAGCGAATTACTCGATCGGCGATGAAAGAAAAGGTTGAATCCGGTGAGGATAATGTGACTGTGTTAGAACAACAAGGTGCTACCGTTGCAACTGGTAAAAGCGATGGTGCAACTCCGGTGAGGAGTTTTAAGCGGATTACACGATCAGCTAAGAAAGAAAAGGTTGAATCCGGTGAAGAGGATAAGGTGAATGTGTTAGAACAAGAAGGTGCTGCTGCCATTGCAAGTGGTGATAGCGACGGTTCGGTGAGGACTTTCAAGCGGATTACAAGGTCGGCTGCTATAAAAGAGAATGCTGAGTCCGGTGAGGAGACTGTGACGAAGTTAGAACAAGAAGGTCCTGCTGTTGAGAGTGCATTAGCTGCTCGGAGAAACAAGATGGAGTTGAAGATGTCGAAGAAGATTGCGGTCGATAAGAAGCCGCCTACAACAGTCAAGGAGCTCTTTCGTACCGGTTTACTCGATGGTGTCTCTGTGGTTTACGTGAGCGGTATTAAGAAGGTTTCAGGATTAAGGGGTGTTATTAGAGATGAGGGAATATTGTGCTCGTGCTGTCTCTGTGAGGGACGCAGGGTTATTCCGCCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCAGTAGAGTATATTTGCTTTGAAAATGGGAAGAGTCTACTTGATCTGTTGAGAGCGTGCAAGGGAGCTCCCCTGCATGATTTGGAGGCAACAATTCAAAATATTGTTCGTTCTCCACCCGAGGAAAAATATTTTACTTGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCATTTATGGAAAGAGTGGGACCTATATGCTGTTCTTGTGTAGAATCAAGTAAATCTGAAGAAAGTGCGAAGAATGTAGTTGGCAAAAGAATCAGGTCTCCTATACCAGTGTTGGTCTCCAAGTCATCCTGTGCTTCTGAGATGTCTATCTCTCCAAATAGTAAGAGACGCGGGAAGAAAAGAAGAAAGTCATCAAAAAGGGTCAACAGCTCAAATTCTTCCAAGAGTGCTTCTGTGCCTATTCTACCCCGGAGGAAAATTACGCCGAAGATGAAAAAGAAGTCACTGTCCGTAAAGTTGAAGACCACTTCAAATTCAAATTGTTTATCTCCAAAAAATAAAAGTGAATGGAAGATAACTAAGAAGGATAATCGGTTGCACAAATTAGTTTTTGAGGAAAATGGATTGCCTGATGGAAGTGAAGTAGCTTATTATGCAGGCGGACAGAAATTGCTGGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTAGATGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTTCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGGGTGTCTCTCCATGAATTATCAATATCTCTCTCCAAAGGCCGAAAATACTCGGCAAATGACAATGATGATCTATGTGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGTTGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGGGAAAAGTTTGTCGCGTACAATGTCAATGCTTTTGCTGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAGCAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGATGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCAGATCTGGCTTTGGTCCACGCACAATAATACTCTGTGATCAGTGTGAAAAGGAGTATCATGTTGGATGTTTGAGGGATTACAAAATGGCATTTCTAAAGGAATTGCCGAAAGGTAACTGGCTTTGTTGCAATGATTGCACGAGAATACATTCTACTTTGGAGAACGTTTTAGTTAGAGGGGCTGAGAGACTCCCTGAATCTCTCTTGGCTGTTATAAAGAAAAAGCAAGAGGGAAAAGGATTGGATCCCATCAATGATATTAATGTGAGATGGAGGCTTCTTAGTGGGAAAAAAGCGTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTCTCTATCTTTCATGAATGCTTCGATCCTATAGTTGATGCAGTTAGCGGACGTGACCTTATTCGAGCAATGGTTTATGGAAAGAGTGTGCGGGGTCAAGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGTATGCTTCGAATCTTCGGCACCGATATTGCTGAACTTCCTTTAGTTGCAACAAGTAACAGTCACCATGGGAAGGGCTACTTCCAAGCACTATTCTCTTGCATTGAGAGGCTCTTGGCTTTCCTGAAAGTAAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCACAATCCATATGGACTGATAGATTTGGGTTTAGCAAGATTAAACCAGACGAGCTTGCCAACTACAGAAGGAACTGCAATCAGTTTGTAACCTTCCAAGGGACAAATATGCTTCATAAAACGGTGCCTTCATGCCGAGTCATCAATAGACAATAG 2862 0.4336 MDARKISMVNGYIVYTRLKRSLNSSNNFSEEVDCKRFKEDAEVKTVSREVPVTATATFKRITRSATKANVGSGEETVTVVEQKGEGDDAVAIGRGDDKVPVRNFKRITRSAMKEKVESGEDNVTVLEQQGATVATGKSDGATPVRSFKRITRSAKKEKVESGEEDKVNVLEQEGAAAIASGDSDGSVRTFKRITRSAAIKENAESGEETVTKLEQEGPAVESALAARRNKMELKMSKKIAVDKKPPTTVKELFRTGLLDGVSVVYVSGIKKVSGLRGVIRDEGILCSCCLCEGRRVIPPSQFEIHACKQYRRAVEYICFENGKSLLDLLRACKGAPLHDLEATIQNIVRSPPEEKYFTCKRCKGCFPSSFMERVGPICCSCVESSKSEESAKNVVGKRIRSPIPVLVSKSSCASEMSISPNSKRRGKKRRKSSKRVNSSNSSKSASVPILPRRKITPKMKKKSLSVKLKTTSNSNCLSPKNKSEWKITKKDNRLHKLVFEENGLPDGSEVAYYAGGQKLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKGRKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNVNAFAAGRVEGVDPIEQITKRCIRIVKDIDAELSGCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDYKMAFLKELPKGNWLCCNDCTRIHSTLENVLVRGAERLPESLLAVIKKKQEGKGLDPINDINVRWRLLSGKKASPETRPLLLEAVSIFHECFDPIVDAVSGRDLIRAMVYGKSVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNSHHGKGYFQALFSCIERLLAFLKVKNLVLPAAEEAQSIWTDRFGFSKIKPDELANYRRNCNQFVTFQGTNMLHKTVPSCRVINRQ* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4280 953 MobiDBLite consensus disorder prediction 414 462 - -
Mal3g4280 953 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 832 918 IPR016181 -
Mal3g4280 953 PANTHER AUTOIMMUNE REGULATOR 6 950 - -
Mal3g4280 953 SUPERFAMILY FYVE/PHD zinc finger 667 730 IPR011011 -
Mal3g4280 953 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 735 IPR013083 -
Mal3g4280 953 SMART PHD_3 676 733 IPR001965 -
Mal3g4280 953 SMART PHD_3 588 629 IPR001965 -
Mal3g4280 953 Coils Coil 196 216 - -
Mal3g4280 953 Pfam PHD-finger 589 630 IPR019787 -
Mal3g4280 953 ProSitePatterns Zinc finger PHD-type signature. 589 628 IPR019786 -
Mal3g4280 953 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 665 IPR013083 -
Mal3g4280 953 SUPERFAMILY FYVE/PHD zinc finger 577 634 IPR011011 -
Mal3g4280 953 ProSiteProfiles Zinc finger PHD-type profile. 586 631 IPR019787 -
Mal3g4280 953 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 6 950 - -
Mal3g4280 953 Coils Coil 109 129 - -
Mal3g4280 953 Pfam Tify domain binding domain 526 570 IPR032308 -
Mal3g4280 953 Pfam Tify domain binding domain 277 332 IPR032308 -
Mal3g4280 953 CDD PHD1_AIRE 588 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4280 Mal-Chr3 122105763 122116192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4280 233 952 PHD Transcription Factor Family AT2G36720 53.940 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal3g4280 TDBD 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4280 - - cam:101512705 1457.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4280 3 122105763 122116192 Mal1g3154 1 48676882 48685253 PCT